Citation:

PANGAEA.818214

Name: Abundance of Gamma-A nifH genes from diazotrophic microorganisms in the South China Sea during intermonsoon
Published: 2013-08-19
License: https://creativecommons.org/licenses/by/3.0/
Keywords: MAREDAT_Diazotrophs_Collection

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Keyword(s):

MAREDAT_Diazotrophs_Collection

Related to:

Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012

Moisander, Pia H; Beinart, Roxanne A; Voss, Maren; Zehr, Jonathan P (2008): Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon. The ISME Journal, 2(9), 954-967, https://doi.org/10.1038/ismej.2008.51

Coverage:

Median Latitude: 10.376051 * Median Longitude: 108.515717 * South-bound Latitude: 9.100000 * West-bound Longitude: 106.270000 * North-bound Latitude: 11.968167 * East-bound Longitude: 110.370500

Date/Time Start: 2006-04-12T04:57:00 * Date/Time End: 2006-04-20T05:24:00

Minimum DEPTH, water: 0 m * Maximum DEPTH, water: 1700 m

Event(s):

SO187/2_07-1 * Latitude: 11.968167 * Longitude: 109.641667 * Date/Time: 2006-04-12T04:57:00 * Elevation: -142.0 m * Location: China Sea * Campaign: (VIETNAM) * Basis: * Method/Device: (CTD-RO)

SO187/2_11-1 * Latitude: 11.040000 * Longitude: 108.949000 * Date/Time: 2006-04-13T01:43:00 * Elevation: -60.0 m * Location: China Sea * Campaign: (VIETNAM) * Basis: * Method/Device: (CTD-RO)

SO187/2_12-1 * Latitude: 10.817667 * Longitude: 108.703667 * Date/Time: 2006-04-13T04:08:00 * Elevation: -47.0 m * Location: China Sea * Campaign: (VIETNAM) * Basis: * Method/Device: (CTD-RO)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event
2	Latitude of event	Latitude
3	Longitude of event	Longitude
4	Date/Time of event	Date/Time
5	DEPTH, water	Depth water	m			Geocode
6	Trichodesmium, abundance expressed in number of nifH gene copies	Trichodesmium abund nifH copies	10⁶ #/m³	Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
7	Trichodesmium abundance, total	Trichodesmium abund total	10⁶ #/m³	Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
8	Trichodesmium, biomass as carbon	Trichodesmium C	mg/m³	Luo, Yawei	Calculated
9	Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies	UCYN-A abund nifH copies	10⁶ #/m³	Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
10	Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-A C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated
11	Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies	UCYN-B abund nifH copies	10⁶ #/m³	Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
12	Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-B C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated
13	Unicellular cyanobacteria, biomass	UCYN biom	mg/m²	Luo, Yawei	Calculated
14	Richelia, associated species	Richelia association		Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
15	Richelia, abundance expressed in number of nifH gene copies	Richelia abund nifH copies	10⁶ #/m³	Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
16	Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	Richelia C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated
17	Calothrix, associated species	Calothrix association		Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
18	Calothrix, abundance expressed in number of nifH gene copies	Calothrix abund nifH copies	10⁶ #/m³	Moisander, Pia H	Fluorescence-based quantitative real-time PCR (qPCR)
19	Calothrix, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	Calothrix C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated
20	Heterocyst, biomass	Heterocyst biom	mg/m³	Luo, Yawei	Calculated
21	Diazotrophs, total biomass as carbon	Diazotrophs total C	mg/m³	Luo, Yawei	Calculated

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

637 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Latitude	3 Longitude	4 Date/Time	5 Depth water [m]	6 Trichodesmium abund nifH copies [10⁶ #/m³]	7 Trichodesmium abund total [10⁶ #/m³]	8 Trichodesmium C [mg/m³]	9 UCYN-A abund nifH copies [10⁶ #/m³]	10 UCYN-A C per nifH copies [mg/10⁶ #]	11 UCYN-B abund nifH copies [10⁶ #/m³]	12 UCYN-B C per nifH copies [mg/10⁶ #]	13 UCYN biom [mg/m²]	14 Richelia association	15 Richelia abund nifH copies [10⁶ #/m³]	16 Richelia C per nifH copies [mg/10⁶ #]	17 Calothrix association	18 Calothrix abund nifH copies [10⁶ #/m³]	19 Calothrix C per nifH copies [mg/10⁶ #]	20 Heterocyst biom [mg/m³]	21 Diazotrophs total C [mg/m³]
SO187/2_07-1	11.97	109.64	2006-04-12	0	1.1626	0.3	0.349	5.2500	0.0002	0.0000	0.02	0.0011	Rhizosolenia	0.3355	0.01	Chaetoceros	0.0000	0.01	0.0034	0.353
SO187/2_07-1	11.97	109.64	2006-04-12	10	20.5794	0.3	6.174			0.0000	0.02	0.0000								6.174
SO187/2_11-1	11.04	108.95	2006-04-13	5	0.0764	0.3	0.023	0.0000	0.0002	0.0000	0.02	0.0000				Chaetoceros	0.0000	0.01	0.0000	0.023
SO187/2_11-1	11.04	108.95	2006-04-13	50	0.2684	0.3	0.081			0.0000	0.02	0.0000								0.081
SO187/2_12-1	10.82	108.70	2006-04-13	5	0.5337	0.3	0.160	0.0000	0.0002			0.0000	Rhizosolenia	0.0972	0.01	Chaetoceros	0.0000	0.01	0.0010	0.161
SO187/2_12-1	10.82	108.70	2006-04-13	35	8.6209	0.3	2.586	0.0000	0.0002			0.0000								2.586
SO187/2_13-1	10.60	108.31	2006-04-13	5	0.4851	0.3	0.146	0.0000	0.0002	0.0000	0.02	0.0000	Rhizosolenia	0.3135	0.01	Chaetoceros	0.0000	0.01	0.0031	0.149
SO187/2_13-1	10.60	108.31	2006-04-13	28	19.7117	0.3	5.914	0.0000	0.0002	0.0000	0.02	0.0000								5.914
SO187/2_17-1	10.01	107.44	2006-04-13	5	2.3930	0.3	0.718	0.0000	0.0002	0.0000	0.02	0.0000	Rhizosolenia	0.0313	0.01	Chaetoceros	0.0000	0.01	0.0003	0.718
SO187/2_17-1	10.01	107.44	2006-04-13	26	3.8558	0.3	1.157	0.0000	0.0002			0.0000								1.157
SO187/2_15-1	10.21	107.60	2006-04-13	5		0.3		0.0000	0.0002			0.0000	Rhizosolenia	0.0680	0.01	Chaetoceros	0.0000	0.01	0.0007	0.001
SO187/2_15-1	10.21	107.60	2006-04-13	25				0.0000	0.0002	0.0000	0.02	0.0000								0.000
SO187/2_21-1a	9.89	107.52	2006-04-14	5	75.6702	0.3	22.701	0.0000	0.0002	2.6213	0.02	0.0524				Chaetoceros	0.0000	0.01	0.0000	22.753
SO187/2_21-1a	9.89	107.52	2006-04-14	20	0.5280	0.3	0.158	0.0000	0.0002	0.0000	0.02	0.0000								0.158
SO187/2_20-2	9.78	107.18	2006-04-14	5				0.0000	0.0002	0.0000	0.02	0.0000				Chaetoceros	0.0000	0.01	0.0000	0.000
SO187/2_20-2	9.78	107.18	2006-04-14	25						0.0000	0.02	0.0000								0.000
SO187/2_21-1	9.88	107.00	2006-04-14	5				0.0000	0.0002	0.0000	0.02	0.0000				Chaetoceros	0.0000	0.01	0.0000	0.000
SO187/2_21-1	9.88	107.00	2006-04-14	20				0.0000	0.0002	0.0000	0.02	0.0000								0.000
SO187/2_29-9	9.50	107.00	2006-04-15	5	12.6368	0.3	3.791	0.0000	0.0002	2.3332	0.02	0.0467				Chaetoceros	0.0000	0.01	0.0000	3.838
SO187/2_29-14a	9.10	106.27	2006-04-15	5				0.0000	0.0002			0.0000								0.000
SO187/2_29-14a	9.10	106.27	2006-04-15	20				0.0000	0.0002	0.0000	0.02	0.0000								0.000
SO187/2_29-35	9.50	107.00	2006-04-16	5	7.2609	0.3	2.178	0.9087	0.0002			0.0002				Chaetoceros	0.0000	0.01	0.0000	2.178
SO187/2_29-35	9.50	107.00	2006-04-16	20	0.4189	0.3	0.126	0.0000	0.0002	0.0000	0.02	0.0000								0.126
SO187/2_37-1a	10.73	108.22	2006-04-17	5	1.9546	0.3	0.586	0.0000	0.0002			0.0000	Hemiaulus,Rhizosolenia	40.0609	0.01	Chaetoceros	0.0000	0.01	0.4006	0.987
SO187/2_37-1a	10.73	108.22	2006-04-17	20	0.8685	0.3	0.261	0.0000	0.0002			0.0000								0.261
SO187/2_32-1	10.19	108.63	2006-04-17	5	227.5081	0.3	68.252	0.0000	0.0002	0.0000	0.02	0.0000	Rhizosolenia	0.0841	0.01	Chaetoceros	0.0000	0.01	0.0008	68.253
SO187/2_32-1	10.19	108.63	2006-04-17	68				0.0000	0.0002			0.0000								0.000
SO187/2_33-1	9.99	108.78	2006-04-17	0	65.3413	0.3	19.602	0.0000	0.0002	0.1540	0.02	0.0031	Rhizosolenia	0.5010	0.01	Chaetoceros	0.0000	0.01	0.0050	19.610
SO187/2_33-1	9.99	108.78	2006-04-17	20	77.0854	0.3	23.126	0.0000	0.0002	1.7173	0.02	0.0343								23.160
SO187/2_33-1	9.99	108.78	2006-04-17	40	316.0038	0.3	94.801	0.8018	0.0002			0.0002								94.801
SO187/2_33-1	9.99	108.78	2006-04-17	75	3.0020	0.3	0.901	0.0000	0.0002			0.0000								0.901
SO187/2_39-1	10.82	108.70	2006-04-18	0	12.4866	0.3	3.746	0.0000	0.0002			0.0000	Chaetoceros,Hemiaulus,Rhizosolenia	1.8617	0.01	Chaetoceros	0.1161	0.01	0.0198	3.766
SO187/2_39-1	10.82	108.70	2006-04-18	20	16.0872	0.3	4.826	0.0000	0.0002			0.0000								4.826
SO187/2_44-1	10.31	109.71	2006-04-18	0	590.4711	0.3	177.141	0.0000	0.0002	0.5155	0.02	0.0103	Hemiaulus	0.2937	0.01	Chaetoceros	0.0000	0.01	0.0029	177.155
SO187/2_44-1	10.31	109.71	2006-04-18	20	82.8430	0.3	24.853	0.0000	0.0002			0.0000								24.853
SO187/2_44-1	10.31	109.71	2006-04-18	40	4.9526	0.3	1.486	0.0000	0.0002	1.9901	0.02	0.0398								1.526
SO187/2_44-1	10.31	109.71	2006-04-18	65				0.0000	0.0002	0.0000	0.02	0.0000								0.000
SO187/2_44-1	10.31	109.71	2006-04-18	100				0.0000	0.0002			0.0000								0.000
SO187/2_44-1	10.31	109.71	2006-04-18	120				0.0000	0.0002			0.0000								0.000
SO187/2_45-1-1a	9.78	109.52	2006-04-18	5	99.7759	0.3	29.933	0.0000	0.0002	0.0000	0.02	0.0000	Hemiaulus	1.1022	0.01	Chaetoceros	0.0000	0.01	0.0110	29.944
SO187/2_45-1-1a	9.78	109.52	2006-04-18	88	1.0060	0.3	0.302	0.0000	0.0002			0.0000								0.302
SO187/2_45-1-1a	9.78	109.52	2006-04-18	1144	0.6970	0.3	0.209	0.0000	0.0002			0.0000								0.209
SO187/2_48-1	10.96	109.75	2006-04-19	5	26.5257	0.3	7.958	0.0000	0.0002	0.0297	0.02	0.0006	Rhizosolenia	0.1676	0.01	Chaetoceros	0.0000	0.01	0.0017	7.960
SO187/2_48-1	10.96	109.75	2006-04-19	75	2.2194	0.3	0.666	0.0000	0.0002	0.0000	0.02	0.0000								0.666
SO187/2_48-1	10.96	109.75	2006-04-19	280	0.4342	0.3	0.130	0.0000	0.0002	0.0000	0.02	0.0000								0.130
SO187/2_46-1	10.52	110.37	2006-04-19	5	117.5661	0.3	35.270	0.0000	0.0002			0.0000	Hemiaulus,Rhizosolenia	44.1212	0.01	Chaetoceros	0.0000	0.01	0.4412	35.711
SO187/2_46-1	10.52	110.37	2006-04-19	65	3.1776	0.3	0.953	0.0000	0.0002			0.0000								0.953
SO187/2_46-1	10.52	110.37	2006-04-19	400	19.6355	0.3	5.891													5.891
SO187/2_46-1	10.52	110.37	2006-04-19	1000	0.1266	0.3	0.038	0.0000	0.0002	0.0000	0.02	0.0000								0.038
SO187/2_46-1	10.52	110.37	2006-04-19	1700	0.0141	0.3	0.004	0.0000	0.0002	0.0000	0.02	0.0000								0.004
SO187/2_45-4	10.03	109.97	2006-04-19	0	1.8013	0.3	0.540									Chaetoceros	0.0000	0.01	0.0000	0.540
SO187/2_45-4	10.03	109.97	2006-04-19	40	0.5495	0.3	0.165	35.9388	0.0002			0.0072								0.172
SO187/2_45-4	10.03	109.97	2006-04-19	75	0.4564	0.3	0.137	0.0000	0.0002			0.0000								0.137
SO187/2_45-4	10.03	109.97	2006-04-19	100	3.5866	0.3	1.076	0.0000	0.0002	0.0000	0.02	0.0000								1.076
SO187/2_45-4	10.03	109.97	2006-04-19	150				0.0000	0.0002	0.0000	0.02	0.0000								0.000
SO187/2_45-4	10.03	109.97	2006-04-19	200				0.0000	0.0002	0.0000	0.02	0.0000								0.000
SO187/2_45-4	10.03	109.97	2006-04-19	400				0.0000	0.0002	0.0000	0.02	0.0000								0.000
SO187/2_45-4	10.03	109.97	2006-04-19	1200	0.0256	0.3	0.008													0.008
SO187/2_45-4	10.03	109.97	2006-04-19	1500	0.0461	0.3	0.014	0.0000	0.0002	0.0000	0.02	0.0000								0.014
SO187/2_53-1a	11.63	109.51	2006-04-20	5	31.2711	0.3	9.381	0.0000	0.0002	0.0000	0.02	0.0000	Hemiaulus	0.0503	0.01	Chaetoceros	0.0000	0.01	0.0005	9.382
SO187/2_53-1a	11.63	109.51	2006-04-20	65	6.1865	0.3	1.856	0.0000	0.0002	0.0000	0.02	0.0000								1.856
SO187/2_53-1a	11.63	109.51	2006-04-20	126	1.2959	0.3	0.389	0.0000	0.0002	0.0000	0.02	0.0000								0.389
SO187/2_54-2	11.39	110.09	2006-04-20	0	10.3926	0.3	3.118	0.0000	0.0002	0.0000	0.02	0.0000				Chaetoceros	0.0000	0.01	0.0000	3.118
SO187/2_54-2	11.39	110.09	2006-04-20	20	5.0375	0.3	1.511	0.0000	0.0002	0.0000	0.02	0.0000								1.511
SO187/2_54-2	11.39	110.09	2006-04-20	60	0.0169	0.3	0.005	0.0000	0.0002	0.0000	0.02	0.0000								0.005
SO187/2_54-2	11.39	110.09	2006-04-20	110	0.0100	0.3	0.003	0.0000	0.0002	0.0000	0.02	0.0000								0.003
SO187/2_54-2	11.39	110.09	2006-04-20	210	0.3609	0.3	0.108	0.0000	0.0002	0.0000	0.02	0.0000								0.108
SO187/2_54-2	11.39	110.09	2006-04-20	400	2.3454	0.3	0.704	0.0000	0.0002	0.0000	0.02	0.0000								0.704
SO187/2_54-2	11.39	110.09	2006-04-20	600	0.0334	0.3	0.010													0.010