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Schattenhofer, Martha; Fuchs, Bernhard M; Amann, Rudolf; Zubkov, Mikhail V; Tarran, Glen A; Pernthaler, Jakob (2013): Relative abundance of prokaryotic picoplankton populations in the Atlantic Ocean [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.818029, Supplement to: Schattenhofer, M et al. (2009): Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environmental Microbiology, 11(8), 2078-2093, https://doi.org/10.1111/j.1462-2920.2009.01929.x

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Abstract:
Members of the prokaryotic picoplankton are the main drivers of the biogeochemical cycles over large areas of the world's oceans. In order to ascertain changes in picoplankton composition in the euphotic and twilight zones at an ocean basin scale we determined the distribution of 11 marine bacterial and archaeal phyla in three different water layers along a transect across the Atlantic Ocean from South Africa (32.9°S) to the UK (46.4°N) during boreal spring. Depth profiles down to 500 m at 65 stations were analysed by catalysed reporter deposition fluorescence in situ hybridization (CARD-FISH) and automated epifluorescence microscopy. There was no obvious overall difference in microbial community composition between the surface water layer and the deep chlorophyll maximum (DCM) layer. There were, however, significant differences between the two photic water layers and the mesopelagic zone. SAR11 (35 ± 9%) and Prochlorococcus (12 ± 8%) together dominated the surface waters, whereas SAR11 and Crenarchaeota of the marine group I formed equal proportions of the picoplankton community below the DCM (both ~15%). However, due to their small cell sizes Crenarchaeota contributed distinctly less to total microbial biomass than SAR11 in this mesopelagic water layer. Bacteria from the uncultured Chloroflexi-related clade SAR202 occurred preferentially below the DCM (4-6%). Distinct latitudinal distribution patterns were found both in the photic zone and in the mesopelagic waters: in the photic zone, SAR11 was more abundant in the Northern Atlantic Ocean (up to 45%) than in the Southern Atlantic gyre (~25%), the biomass of Prochlorococcus peaked in the tropical Atlantic Ocean, and Bacteroidetes and Gammaproteobacteria bloomed in the nutrient-rich northern temperate waters and in the Benguela upwelling. In mesopelagic waters, higher proportions of SAR202 were present in both central gyre regions, whereas Crenarchaeota were clearly more abundant in the upwelling regions and in higher latitudes. Other phylogenetic groups such as the Planctomycetes, marine group II Euryarchaeota and the uncultured clades SAR406, SAR324 and SAR86 rarely exceeded more than 5% of relative abundance.
Coverage:
Median Latitude: 5.663841 * Median Longitude: -24.525838 * South-bound Latitude: -32.970500 * West-bound Longitude: -46.075170 * North-bound Latitude: 46.365670 * East-bound Longitude: 16.973670
Date/Time Start: 2005-01-06T00:00:00 * Date/Time End: 2005-12-06T00:00:00
Minimum DEPTH, water: m * Maximum DEPTH, water: 5900 m
Event(s):
D294/1 (AMT16/1)  * Latitude: -32.970500 * Longitude: 16.973670 * Date/Time: 2005-05-21T00:00:00 * Location: Benguela Current Coastal Province * Campaign: D294 (AMT16) * Basis: Discovery (1962) * Method/Device: Bottle, Niskin (NIS)
D294/2 (AMT16/2)  * Latitude: -31.006500 * Longitude: 16.492500 * Date/Time: 2005-05-21T00:00:00 * Location: Benguela Current Coastal Province * Campaign: D294 (AMT16) * Basis: Discovery (1962) * Method/Device: Bottle, Niskin (NIS)
D294/3 (AMT16/3)  * Latitude: -31.833000 * Longitude: 10.500170 * Date/Time: 2005-05-24T00:00:00 * Location: Benguela Current Coastal Province * Campaign: D294 (AMT16) * Basis: Discovery (1962) * Method/Device: Bottle, Niskin (NIS)
Comment:
These data were achieved in the framework of the Atlantic Meridional Transect (AMT) consortium.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEvent
Latitude of eventLatitude
Longitude of eventLongitude
DEPTH, waterDepth watermGeocode
ProkaryotesProkaryotes#/mlSchattenhofer, MarthaEpifluorescence microscopy after DAPI staining
Alteromonas/Colwellia, targeted with Alt1413 oligonucleotide FISH-probeAlt1413%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 40%; hybridization temperature = 46°C; washing temperature = 46°C
Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probeEUB338 I-III%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 35%; hybridization temperature = 46°C; washing temperature = 46°C
Bacteroidetes, targeted with CF319a oligonucleotide FISH-probeCF319a%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 35%; hybridization temperature = 46°C; washing temperature = 46°C
Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probeCren554%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 0%; hybridization temperature = 46°C; washing temperature = 46°C
10 Euryarchaeota marine group II, targeted with Eury806 oligonucleotide FISH-probeEury806%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 0%; hybridization temperature = 46°C; washing temperature = 46°C
11 Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probeGam42a%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 35%; hybridization temperature = 46°C; washing temperature = 46°C
12 Oceanospirillum, targeted with Oce232 oligonucleotide FISH-probeOce232%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 40%; hybridization temperature = 46°C; washing temperature = 46°C
13 Planctomycetes, targeted with Pla46 oligonucleotide FISH-probePla46%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 30%; hybridization temperature = 46°C; washing temperature = 46°C
14 Prochlorococcus, targeted with PRO405 oligonucleotide FISH-probePRO405%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 40%; hybridization temperature = 46°C; washing temperature = 46°C
15 Pseudoalteromonas, targeted with PSA184 oligonucleotide FISH-probePSA184%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 30%; hybridization temperature = 46°C; washing temperature = 46°C
16 SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probeSAR11-441%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 25%; hybridization temperature = 46°C; washing temperature = 46°C
17 SAR202 clade, targeted with SAR202-312R oligonucleotide FISH-probeSAR202-312R%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 40%; hybridization temperature = 46°C; washing temperature = 46°C
18 SAR324 clade, targeted with SAR324-1412 oligonucleotide FISH-probeSAR324-1412%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 35%; hybridization temperature = 46°C; washing temperature = 46°C
19 SAR406 clade, targeted with SAR406-97 oligonucleotide FISH-probeSAR406-97%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 35%; hybridization temperature = 46°C; washing temperature = 46°C
20 SAR86 clade, targeted with SAR86-1245 oligonucleotide FISH-probeSAR86-1245%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 35%; hybridization temperature = 46°C; washing temperature = 46°C
21 Vibrio, targeted with GV841 oligonucleotide FISH-probeGV841%Schattenhofer, MarthaCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 30%; hybridization temperature = 46°C; washing temperature = 46°C
Size:
3986 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Latitude

Longitude

Depth water [m]

Prokaryotes [#/ml]

Alt1413 [%]

EUB338 I-III [%]

CF319a [%]

Cren554 [%]
10 
Eury806 [%]
11 
Gam42a [%]
12 
Oce232 [%]
13 
Pla46 [%]
14 
PRO405 [%]
15 
PSA184 [%]
16 
SAR11-441 [%]
17 
SAR202-312R [%]
18 
SAR324-1412 [%]
19 
SAR406-97 [%]
20 
SAR86-1245 [%]
21 
GV841 [%]
D294/1 -32.970516.973721.300E679.1630.8362.86564.0960.354
D294/1-32.970516.9737306.800E566.5211.1956.20543.0320.096
D294/1-32.970516.9737501.400E674.2591.4331.59142.0390.138
D294/1-32.970516.9737857.600E557.9643.8892.02640.3170.953
D294/1-32.970516.97371759.300E547.20125.6070.33816.5950.401
D294/1-32.970516.97372501.500E664.22736.9550.58219.0670.651
D294/2 -31.006516.492522.100E683.04112.8312.9164.2086.6910.2860.00043.7531.6350.6900.6110.047
D294/2-31.006516.4925301.500E667.94612.4364.6111.3134.7430.0921.07935.1171.9180.6141.0490.046
D294/2-31.006516.4925505.400E551.4775.31816.9470.4634.0120.7781.37325.3180.7330.2330.0000.000
D294/2-31.006516.49251003.900E545.1832.81622.8870.2153.2740.3281.04519.3520.7320.3340.3850.000
D294/2-31.006516.49251504.300E547.9443.06726.2940.0004.6560.3790.76116.5550.9440.0490.9850.000
D294/2-31.006516.49252501.100E645.9629.89231.6700.2403.5750.04417.7010.6310.0921.0080.000
D294/3 -31.833010.500221.700E674.4709.2011.3170.13839.3331.5830.2970.614
D294/3-31.833010.5002659.100E556.1807.6631.7690.3762.4138.84234.5221.6890.2700.556
D294/3-31.833010.5002967.800E554.5858.3551.8821.0082.52939.1891.7540.824
D294/3-31.833010.50021443.000E542.4791.56118.1890.1562.4322.86417.0206.5441.391
D294/3-31.833010.50022002.700E544.0640.73319.1340.2103.2022.68211.9186.7060.3230.919
D294/3-31.833010.50023001.900E547.8761.04720.4880.0001.7412.52414.6254.1790.6130.496
D294/4 -31.58139.327727.400E560.3705.6590.9660.1272.39316.82928.9091.7840.1961.077
D294/4-31.58139.3277428.600E556.9573.4700.8910.00015.33922.9331.9090.5490.663
D294/4-31.58139.32771007.200E567.1096.1330.6840.0002.71015.94431.7632.2550.2930.394
D294/4-31.58139.32771503.500E546.1351.69714.4950.4952.7732.17611.7915.1850.2460.641
D294/4-31.58139.32772252.500E542.6860.84722.8100.0002.2552.12011.2313.9090.2710.633
D294/4-31.58139.32773002.300E542.5931.10317.9131.0404.3771.83813.1362.7690.1610.779
D294/5 -30.63354.223021.000E668.1938.3710.4420.96915.83841.3301.2480.1451.026
D294/5-30.63354.2230508.400E560.3627.8440.2471.4423.04214.26539.2400.8230.2880.673
D294/5-30.63354.2230808.300E566.6824.6260.4380.2802.86215.52732.8001.2030.1470.804
D294/5-30.63354.22301254.100E558.7693.43710.2400.4832.5253.19124.4601.6350.1970.720
D294/5-30.63354.22302252.800E552.7051.87115.4110.0002.2501.97914.1153.5310.2210.692
D294/5-30.63354.22303002.500E558.0491.49922.4210.5183.3473.54210.9644.2500.1970.454
D294/6 -29.96620.700827.800E566.7000.2370.36034.5801.301
D294/6-29.96620.7008706.900E562.2970.8750.40832.3101.320
D294/6-29.96620.7008954.500E554.3832.3050.00034.1970.000
D294/6-29.96620.70081104.200E543.5065.0420.19215.3521.947
D294/6-29.96620.70082401.900E552.62818.4170.00010.9453.363
D294/6-29.96620.70083001.900E553.85516.6590.00017.9924.224
D294/7 -28.7432-5.756828.200E566.5660.3890.06733.0370.380
D294/7-28.7432-5.7568804.700E561.6690.6500.26526.5890.499
D294/7-28.7432-5.75681006.600E559.0791.4270.43527.8770.986
D294/7-28.7432-5.75681256.800E551.8316.7890.14221.8952.852
D294/7-28.7432-5.75682251.700E548.17712.8880.00010.5794.744
D294/7-28.7432-5.75683002.100E542.06611.6360.10515.2358.554
D294/8 -28.0697-9.248228.000E573.7586.1460.0480.0502.7407.88824.9320.4730.2480.0000.000
D294/8-28.0697-9.24821055.700E566.1703.6200.4300.1490.66317.08223.2731.5520.4620.0000.454
D294/8-28.0697-9.24821154.800E566.4771.4131.0580.1870.73714.76428.1870.8970.2300.0000.000
D294/8-28.0697-9.24821303.300E557.6761.5676.7780.0001.2586.18138.1092.1590.3960.0000.000
D294/8-28.0697-9.24822002.000E544.8130.18213.4510.0001.7631.40516.8024.7240.5650.0000.000
D294/8-28.0697-9.24823001.400E541.5290.41224.5480.0941.06416.4487.0320.5100.0000.000
D294/9 -27.8302-10.513526.000E577.6685.1140.4470.1305.5340.00022.30523.1811.6460.6300.0000.048
D294/9-27.8302-10.5135956.300E567.7954.0700.0960.0002.1350.00026.86936.4511.4660.6741.6490.000
D294/9-27.8302-10.51351254.100E551.5902.6332.9320.0001.6830.2899.60528.2061.1930.8921.6100.000
D294/9-27.8302-10.51351504.100E549.1092.3736.1470.0492.1090.1385.68125.4581.7480.5321.3150.046
D294/9-27.8302-10.51352252.300E542.2920.46720.5850.0002.6880.0002.29314.2798.0521.1491.0420.112
D294/9-27.8302-10.51353002.000E552.0180.30812.3700.1004.8030.68411.19017.5011.2612.5800.000
D294/11 -27.2300-13.442826.600E573.0350.6640.3422.31121.72929.4380.4880.0400.187
D294/11-27.2300-13.44281204.400E565.7492.5111.7440.3411.16815.66231.9141.6700.1960.000
D294/11-27.2300-13.44281304.400E556.0821.3161.1150.0541.57713.23935.2022.6760.1980.1730.000
D294/11-27.2300-13.44281403.900E549.5671.9182.6500.0001.1318.26527.3253.7940.2940.0000.000
D294/11-27.2300-13.44282202.200E549.8740.20911.5120.0001.59510.3918.6240.8200.0000.000
D294/12 -27.1665-13.828727.500E571.5875.4780.1930.2203.45325.04127.0521.1970.1890.0680.000
D294/12-27.1665-13.82871107.000E567.1444.3801.5360.2332.27315.95726.0870.7760.2360.046
D294/12-27.1665-13.82871256.200E560.2113.2350.4300.1471.21117.63327.6721.8020.5040.0330.000
D294/12-27.1665-13.82871503.700E549.3230.91514.9830.2931.2869.92322.9672.2720.4430.0000.000
D294/12-27.1665-13.82872252.600E550.5460.08212.3130.0000.5891.03817.7939.2890.0000.0000.000
D294/12-27.1665-13.82873001.600E544.7280.00010.8360.0002.2361.43211.6368.2810.4840.0850.000
D294/13 -26.5265-17.2280157.600E578.3740.1440.1777.38921.3870.9620.6710.0000.000
D294/13-26.5265-17.2280956.700E562.8852.7750.2820.1481.84424.01021.4031.2140.9860.0000.046
D294/13-26.5265-17.22801154.400E553.8391.7630.3380.0001.80615.56315.2002.8680.2440.0000.125
D294/13-26.5265-17.22801353.300E557.4320.9651.9440.1592.0237.50416.4240.8440.3550.0000.000
D294/13-26.5265-17.22802004.900E565.5333.5715.9690.0941.5696.20518.3542.1690.3250.0580.140
D294/13-26.5265-17.22803001.500E532.6011.80517.5770.1951.5631.52712.0258.9220.3430.0490.133
D294/13-26.5265-17.22806009.500E444.2881.69318.7820.0003.8310.86715.4536.8700.2910.2690.229
D294/13-26.5265-17.228010009.100E470.7882.1288.6060.0481.7050.89210.1696.8950.2480.4190.304
D294/14 -26.2837-18.4617176.600E578.3723.4430.3800.1481.78511.18128.7144.9920.1470.0410.000
D294/14-26.2837-18.46171105.800E566.8773.2520.9620.0961.71722.27031.1051.7560.4260.0300.082
D294/14-26.2837-18.46171304.500E558.7802.3610.2480.1401.85212.54921.6862.1760.0500.0000.204
D294/14-26.2837-18.46171504.300E550.9001.6101.3760.0001.5485.43229.3532.1540.7440.000
D294/14-26.2837-18.46172252.000E546.4751.35912.3460.0003.2751.65818.1007.1500.3540.000
D294/14-26.2837-18.46173001.700E550.2460.30616.5840.0491.18214.7668.2610.5960.000
D294/15 -25.6043-21.9328147.900E576.1050.5580.1931.2196.38024.0880.9700.5770.000
D294/15-25.6043-21.9328856.700E571.8581.9240.1431.22717.56832.1760.9680.4660.000
D294/15-25.6043-21.93281054.600E554.8211.8250.0490.9181.24733.6311.8950.5950.000
D294/15-25.6043-21.93281253.700E560.0100.9081.3400.1990.8299.25830.9671.9500.397
D294/15-25.6043-21.93282202.200E542.1840.76213.1590.3772.1871.35917.6108.3590.2090.000
D294/15-25.6043-21.93283001.500E540.4570.44112.8380.0480.7751.4809.5708.6070.2440.000
D294/16 -25.3840-23.0782168.500E575.3133.5900.1440.0003.64713.85923.3610.5640.4650.000
D294/16-25.3840-23.07821006.700E567.0762.3950.2770.0471.08622.84430.4700.9250.4880.000
D294/16-25.3840-23.07821203.100E557.3572.9080.2380.0000.64716.05329.3971.9950.3920.000
D294/16-25.3840-23.07821403.500E547.7071.2965.5660.0000.9826.36120.1946.2831.084
D294/16-25.3840-23.07822002.100E550.1140.27910.4910.0000.8990.93014.5915.8940.873
D294/16-25.3840-23.07823001.400E553.6500.35811.4440.0003.4841.29012.1926.3420.1340.000
D294/17 -22.8802-25.0050178.500E574.9644.9500.7010.2798.3490.11117.39825.5461.8121.2200.5740.000
D294/17-22.8802-25.00501006.800E553.7554.1650.0000.2562.0470.18524.28319.9162.1570.9841.4340.000
D294/17-22.8802-25.00501304.500E556.2072.3720.0950.0763.6120.52712.40319.1104.8111.4641.1850.047
D294/17-22.8802-25.00501503.500E558.0271.2592.0720.2444.6080.2976.35219.9225.3280.8262.8540.000
D294/17-22.8802-25.00502452.300E542.3300.8019.8480.0772.2390.62016.4918.4020.6791.6420.000
D294/17-22.8802-25.00503002.700E543.2701.1729.7800.2292.3510.65812.8578.4630.1891.3710.000
D294/18 -22.4543-25.0000176.500E571.8852.9530.2890.04816.40029.2401.0280.3110.000
D294/18-22.4543-25.0000577.300E574.6383.9330.1030.00019.30125.2420.3460.2430.000
D294/18-22.4543-25.00001303.300E555.3100.8450.3880.1487.47222.2173.1540.4390.000
D294/18-22.4543-25.00001503.300E546.1420.6644.6210.0003.72014.0176.3670.0970.000
D294/18-22.4543-25.00002252.200E544.9850.37214.4990.0581.31513.2674.7400.4220.000
D294/18-22.4543-25.00003001.700E540.8510.29412.9210.0000.5609.5976.3520.6710.000
D294/18-22.4543-25.00005008.800E440.8600.88915.3590.0000.41312.3248.2430.1870.000
D294/18-22.4543-25.000010003.300E451.8120.00011.2620.0003.10911.46111.2070.4910.000
D294/19 -20.1993-24.9973206.600E567.9122.3500.1970.04810.83527.2080.5360.2550.000
D294/19-20.1993-24.99731255.500E568.3301.2591.0580.09515.86623.9091.1360.4660.000
D294/19-20.1993-24.99731504.000E557.9430.5402.1890.11410.84126.8993.5370.2700.000
D294/19-20.1993-24.99732251.700E550.0489.9260.8200.54313.7786.6790.134
D294/19-20.1993-24.99732755.000E562.4022.1712.1310.1414.7064.50421.5542.0430.4850.000
D294/19-20.1993-24.99735004.300E562.2723.1751.9310.1775.03123.1921.6140.6890.024
D294/20 -19.2372-25.0005187.000E571.0962.4330.0940.00015.22318.8040.9910.4110.000
D294/20-19.2372-25.00051305.400E556.5052.1440.6510.00016.08517.5781.7750.4910.000
D294/20-19.2372-25.00051404.300E549.6960.9240.2770.00010.23116.5442.0610.469
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