Citation:

PANGAEA.818214

Name: Abundance of Gamma-A nifH genes in the northern South China Sea
Published: 2013-08-12
License: https://creativecommons.org/licenses/by/3.0/
Keywords: MAREDAT_Diazotrophs_Collection

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook TwitterShow Map Google Earth

Keyword(s):

MAREDAT_Diazotrophs_Collection

Related to:

Kong, Liangliang; Jing, Hongmei; Kataoka, Takafumi; Sun, Jun; Liu, Hongbin (2011): Phylogenetic diversity and spatio-temporal distribution of nitrogenase genes (nifH) in the northern South China Sea. Aquatic Microbial Ecology, 65(1), 15-27, https://doi.org/10.3354/ame01531

Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012

Coverage:

Median Latitude: 19.375000 * Median Longitude: 116.575000 * South-bound Latitude: 18.000000 * West-bound Longitude: 115.000000 * North-bound Latitude: 21.000000 * East-bound Longitude: 118.000000

Date/Time Start: 2009-08-10T00:00:00 * Date/Time End: 2009-08-25T00:00:00

Minimum DEPTH, water: 0 m * Maximum DEPTH, water: 150 m

Event(s):

SCS2009-08-10 * Latitude: 21.000000 * Longitude: 115.000000 * Date/Time: 2009-08-10T00:00:00 * Location: South China Sea * Comment: Sampling dates estimated, cruise in August 2009.

SCS2009-08-15 * Latitude: 19.800000 * Longitude: 116.000000 * Date/Time: 2009-08-15T00:00:00 * Location: South China Sea * Comment: Sampling dates estimated, cruise in August 2009.

SCS2009-08-20 * Latitude: 18.700000 * Longitude: 117.300000 * Date/Time: 2009-08-20T00:00:00 * Location: South China Sea * Comment: Sampling dates estimated, cruise in August 2009.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event
2	Latitude of event	Latitude
3	Longitude of event	Longitude
4	Date/Time of event	Date/Time
5	DEPTH, water	Depth water	m			Geocode
6	Trichodesmium, abundance expressed in number of nifH gene copies	Trichodesmium abund nifH copies	10⁶ #/m³	Kong, Liangliang	Fluorescence-based quantitative real-time PCR (qPCR)
7	Trichodesmium abundance, total	Trichodesmium abund total	10⁶ #/m³	Kong, Liangliang	Fluorescence-based quantitative real-time PCR (qPCR)
8	Trichodesmium, biomass as carbon	Trichodesmium C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
9	Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies	UCYN-A abund nifH copies	10⁶ #/m³	Kong, Liangliang	Fluorescence-based quantitative real-time PCR (qPCR)
10	Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-A C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
11	Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies	UCYN-B abund nifH copies	10⁶ #/m³	Kong, Liangliang	Fluorescence-based quantitative real-time PCR (qPCR)
12	Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-B C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
13	Unicellular cyanobacteria, biomass	UCYN biom	mg/m²	Luo, Yawei	Calculated after Luo et al. (2012)
14	Richelia, associated species	Richelia association		Kong, Liangliang
15	Richelia, abundance expressed in number of nifH gene copies	Richelia abund nifH copies	10⁶ #/m³	Kong, Liangliang	Fluorescence-based quantitative real-time PCR (qPCR)
16	Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	Richelia C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
17	Heterocyst, biomass	Heterocyst biom	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
18	Diazotrophs, total biomass as carbon	Diazotrophs total C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
19	Temperature, water	Temp	°C	Kong, Liangliang	CTD, Sea-Bird SBE 911plus
20	Salinity	Sal		Kong, Liangliang	CTD, Sea-Bird SBE 911plus
21	Nitrate	[NO3]-	µmol/l	Kong, Liangliang	Seawater analysis (Strickland & Parsons, 1968)
22	Phosphate	[PO4]3-	µmol/l	Kong, Liangliang	Determination of phosphate (Murphy & Riley, 1962)
23	Chlorophyll a	Chl a	mg/m³	Kong, Liangliang
24	Comment	Comment		Kong, Liangliang

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

427 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Latitude	3 Longitude	4 Date/Time	5 Depth water [m]	6 Trichodesmium abund nifH copies [10⁶ #/m³]	7 Trichodesmium abund total [10⁶ #/m³]	8 Trichodesmium C [mg/m³]	9 UCYN-A abund nifH copies [10⁶ #/m³]	10 UCYN-A C per nifH copies [mg/10⁶ #]	11 UCYN-B abund nifH copies [10⁶ #/m³]	12 UCYN-B C per nifH copies [mg/10⁶ #]	13 UCYN biom [mg/m²]	14 Richelia association	15 Richelia abund nifH copies [10⁶ #/m³]	16 Richelia C per nifH copies [mg/10⁶ #]	17 Heterocyst biom [mg/m³]	18 Diazotrophs total C [mg/m³]	19 Temp [°C]	20 Sal	21 [NO3]- [µmol/l]	22 [PO4]3- [µmol/l]	23 Chl a [mg/m³]	24 Comment
SCS2009-08-10	21.00	115.00	2009-08-10	0	4.9239	0.3	1.477	1.5531	0.0002	1.0789	0.02	0.0219					1.499	28.20	33.51	0.000	0.010
SCS2009-08-10	21.00	115.00	2009-08-10	25	14.2510	0.3	4.275	1.5531	0.0002	1.5531	0.02	0.0314					4.307	28.20	33.56	0.000	0.030	0.17
SCS2009-08-10	21.00	115.00	2009-08-10	50	0.4083	0.3	0.122	0.0100	0.0002	0.0100	0.02	0.0002					0.123	26.60	33.81	0.292	0.000	0.25	UCYN-A, -B detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-10	21.00	115.00	2009-08-10	75	1.4616	0.3	0.438	0.0100	0.0002	0.0100	0.02	0.0002					0.439	23.90	34.10	4.292	0.330	0.51	UCYN-A, -B detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-10	21.00	115.00	2009-08-10	100				0.0100	0.0002	0.0100	0.02	0.0002					0.000					0.30	UCYN-A, -B detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-10	21.00	115.00	2009-08-10	125				0.0100	0.0002			0.0000					0.000						UCYN-A detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-10	21.00	115.00	2009-08-10	150				0.0100	0.0002			0.0000					0.000						UCYN-A detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-15	19.80	116.00	2009-08-15	0	6.2777	0.3	1.883	0.9555	0.0002	1.1464	0.02	0.0231	Rhizosolenia (AphiaID:149069)	1.7537	0.01	0.0175	1.924	29.70	33.67	0.000	0.010	0.12
SCS2009-08-15	19.80	116.00	2009-08-15	25	9.8993	0.3	2.970	1.3755	0.0002	1.0153	0.02	0.0206	Rhizosolenia (AphiaID:149069)	2.1042	0.01	0.0210	3.011	29.60	33.64	0.000	0.020	0.11
SCS2009-08-15	19.80	116.00	2009-08-15	50	29.5345	0.3	8.860	134.7939	0.0002	0.0100	0.02	0.0272	Rhizosolenia (AphiaID:149069)	3.2188	0.01	0.0322	8.920	25.90	34.05	0.125	0.050	0.30	UCYN-B detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-15	19.80	116.00	2009-08-15	75	1.8635	0.3	0.559	0.8462	0.0002	0.0100	0.02	0.0004	Rhizosolenia (AphiaID:149069)	0.0100	0.01	0.0001	0.560	21.90	34.35	4.792	0.395	0.23	UCYN-B, Richelia detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-15	19.80	116.00	2009-08-15	100	1.3755	0.3	0.413	1.1464	0.0002	0.0100	0.02	0.0004	Rhizosolenia (AphiaID:149069)	0.0100	0.01	0.0001	0.413	19.80	34.51	10.583	0.724	0.09	UCYN-B, Richelia detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-15	19.80	116.00	2009-08-15	125	0.0100	0.3	0.003	0.8992	0.0002			0.0002					0.003	18.20	34.56	11.792	0.796	0.06
SCS2009-08-15	19.80	116.00	2009-08-15	150	32.3512	0.3	9.705	0.0100	0.0002			0.0000					9.705	16.70	34.60	13.833	0.963	0.02	UCYN-A detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-20	18.70	117.30	2009-08-20	0	12.6211	0.3	3.786	2.0412	0.0002	2.7654	0.02	0.0557	Rhizosolenia (AphiaID:149069)	0.7053	0.01	0.0071	3.849	29.80	33.60	0.000	0.029	0.06
SCS2009-08-20	18.70	117.30	2009-08-20	25	19.3070	0.3	5.792	15.6101	0.0002	6.4713	0.02	0.1325	Rhizosolenia (AphiaID:149069)	1.4179	0.01	0.0142	5.939	28.70	33.72	0.000	0.023	0.20
SCS2009-08-20	18.70	117.30	2009-08-20	50	0.5050	0.3	0.152	0.0100	0.0002	0.0100	0.02	0.0002	Rhizosolenia (AphiaID:149069)	0.0100	0.01	0.0001	0.152	24.40	34.06	0.417	0.101	0.19	UCYN-A, -B, Richelia detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-20	18.70	117.30	2009-08-20	75	0.0100	0.3	0.003	0.0100	0.0002	0.0100	0.02	0.0002	Rhizosolenia (AphiaID:149069)	0.4472	0.01	0.0045	0.008	21.80	34.32	6.542	0.488	0.41	UCYN-A, -B detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-20	18.70	117.30	2009-08-20	100	0.0100	0.3	0.003	0.0100	0.0002	0.0100	0.02	0.0002					0.003	20.10	34.46	9.917	0.718	0.16	UCYN-A, -B detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-20	18.70	117.30	2009-08-20	125	0.0100	0.3	0.003	0.0100	0.0002			0.0000					0.003	18.40	34.52	11.625	1.050	0.04	UCYN-A detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-20	18.70	117.30	2009-08-20	150	0.0100	0.3	0.003	0.0100	0.0002			0.0000					0.003	16.70	34.57	16.458	1.139	0.01	UCYN-A detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-25	18.00	118.00	2009-08-25	0	7.3070	0.3	2.192	0.7963	0.0002	5.0757	0.02	0.1017	Rhizosolenia (AphiaID:149069)	2.0412	0.01	0.0204	2.314	28.70	33.39	0.000	0.020	0.09
SCS2009-08-25	18.00	118.00	2009-08-25	25	22.4723	0.3	6.742	0.2364	0.0002	3.4203	0.02	0.0685	Rhizosolenia (AphiaID:149069)	0.6059	0.01	0.0061	6.816	28.60	33.40	0.000	0.023	0.10
SCS2009-08-25	18.00	118.00	2009-08-25	50	21.8003	0.3	6.540	0.0100	0.0002	0.0100	0.02	0.0002	Rhizosolenia (AphiaID:149069)	0.0100	0.01	0.0001	6.540	27.80	33.53	0.125	0.046	0.28	UCYN-A, -B, Richelia detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-25	18.00	118.00	2009-08-25	75	6.6708	0.3	2.001	0.0100	0.0002	0.0100	0.02	0.0002	Rhizosolenia (AphiaID:149069)	0.0100	0.01	0.0001	2.002	23.50	34.14	0.208	0.141	0.48	UCYN-A, -B, Richelia detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-25	18.00	118.00	2009-08-25	100	1095.3690	0.3	328.611	0.0100	0.0002	0.0100	0.02	0.0002	Rhizosolenia (AphiaID:149069)	0.0100	0.01	0.0001	328.611	21.10	34.32	11.583	0.802	0.10	UCYN-A, -B, Richelia detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-25	18.00	118.00	2009-08-25	125	134.7939	0.3	40.438	0.0100	0.0002			0.0000					40.438	19.30	34.46	12.750	0.874	0.16	UCYN-A detected but not quantifiable, assigned 10 copies L**-1
SCS2009-08-25	18.00	118.00	2009-08-25	150	119.3777	0.3	35.813	0.0100	0.0002			0.0000					35.813	17.30	34.56	15.208	1.038	0.02	UCYN-A detected but not quantifiable, assigned 10 copies L**-1