Citation:

PANGAEA.818214

Name: Abundance of Gamma-A nifH genes expression at Stn Aloha in the oligotrophic North Pacific Ocean
Published: 2013-08-09
License: https://creativecommons.org/licenses/by/3.0/
Keywords: MAREDAT_Diazotrophs_Collection

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook TwitterShow Map Google Earth

Keyword(s):

MAREDAT_Diazotrophs_Collection

Related to:

Church, Matthew J; Short, Naomi; Jenkins, Bethany D; Karl, David Michael; Zehr, Jonathan P (2005): Temporal Patterns of Nitrogenase Gene (nifH) Expression in the Oligotrophic North Pacific Ocean. Applied and Environmental Microbiology, 71(9), 5362-5370, https://doi.org/10.1128/AEM.71.9.5362-5370.2005

Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012

Coverage:

Latitude: 22.750000 * Longitude: -158.000000

Date/Time Start: 2002-12-14T00:00:00 * Date/Time End: 2002-12-14T00:00:00

Minimum DEPTH, water: 5 m * Maximum DEPTH, water: 175 m

Event(s):

ALOHA2002-12-13 * Latitude: 22.750000 * Longitude: -158.000000 * Date/Time: 2002-12-14T00:00:00 * Location: Hawaiian Islands, North Central Pacific

ALOHA2002-12-14 * Latitude: 22.750000 * Longitude: -158.000000 * Date/Time: 2002-12-14T00:00:00 * Location: Hawaiian Islands, North Central Pacific

ALOHA2002-12-15 * Latitude: 22.750000 * Longitude: -158.000000 * Date/Time: 2002-12-14T00:00:00 * Location: Hawaiian Islands, North Central Pacific

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event
2	Event label	Event
3	Latitude of event	Latitude
4	Longitude of event	Longitude
5	Date/Time of event	Date/Time
6	DEPTH, water	Depth water	m			Geocode
7	Sample comment	Sample comment		Church, Matthew J
8	Trichodesmium, abundance expressed in number of nifH gene copies	Trichodesmium abund nifH copies	10⁶ #/m³	Church, Matthew J
9	Trichodesmium abundance, total	Trichodesmium abund total	10⁶ #/m³	Church, Matthew J
10	Trichodesmium, biomass as carbon	Trichodesmium C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
11	Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies	UCYN-A abund nifH copies	10⁶ #/m³	Church, Matthew J	Fluorescence-based quantitative real-time PCR (qPCR)
12	Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-A C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
13	Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies	UCYN-B abund nifH copies	10⁶ #/m³	Church, Matthew J	Fluorescence-based quantitative real-time PCR (qPCR)
14	Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-B C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
15	Unicellular cyanobacteria, biomass	UCYN biom	mg/m²	Luo, Yawei	Calculated after Luo et al. (2012)
16	Richelia, associated species	Richelia association		Church, Matthew J
17	Richelia, abundance expressed in number of nifH gene copies	Richelia abund nifH copies	10⁶ #/m³	Church, Matthew J	Fluorescence-based quantitative real-time PCR (qPCR)
18	Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	Richelia C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
19	Heterocyst, biomass	Heterocyst biom	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
20	Diazotrophs, total biomass as carbon	Diazotrophs total C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

341 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Event	3 Latitude	4 Longitude	5 Date/Time	6 Depth water [m]	7 Sample comment	8 Trichodesmium abund nifH copies [10⁶ #/m³]	9 Trichodesmium abund total [10⁶ #/m³]	10 Trichodesmium C [mg/m³] (Calculated after Luo et al. (...)	11 UCYN-A abund nifH copies [10⁶ #/m³] (Fluorescence-based quantitati...)	12 UCYN-A C per nifH copies [mg/10⁶ #] (Calculated after Luo et al. (...)	13 UCYN-B abund nifH copies [10⁶ #/m³] (Fluorescence-based quantitati...)	14 UCYN-B C per nifH copies [mg/10⁶ #] (Calculated after Luo et al. (...)	15 UCYN biom [mg/m²] (Calculated after Luo et al. (...)	16 Richelia association	17 Richelia abund nifH copies [10⁶ #/m³] (Fluorescence-based quantitati...)	18 Richelia C per nifH copies [mg/10⁶ #] (Calculated after Luo et al. (...)	19 Heterocyst biom [mg/m³] (Calculated after Luo et al. (...)	20 Diazotrophs total C [mg/m³] (Calculated after Luo et al. (...)
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	5	midnight sample	16.0651	0.3	4.820	93.4519	0.0002	36.2096	0.02	0.7429	Rhizosolenia	11.7796	0.01	0.1178	5.680
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	25	midnight sample	8.1614	0.3	2.448	93.4519	0.0002	44.3669	0.02	0.9060	Rhizosolenia	5.6099	0.01	0.0561	3.411
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	45	midnight sample	1.5013	0.3	0.450	7.6270	0.0002	873.3262	0.02	17.4680	Rhizosolenia	2.3345	0.01	0.0233	17.942
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	75	midnight sample	1.4030	0.3	0.421	7.1276	0.0002	362.0958	0.02	7.2433
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	100	midnight sample				1.7191	0.0002	1.3111	0.02	0.0266
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	175	midnight sample									Rhizosolenia	0.6934	0.01	0.0069	0.007
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	25	2am local time	0.8808	0.3	0.264	99.3975	0.0002	4.5034	0.02	0.1099	Rhizosolenia	559.7982	0.01	5.5980	5.972
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	25	4am local time	671.0759	0.3	201.323	53.0163	0.0002	17.4369	0.02	0.3593	Rhizosolenia	1545.1704	0.01	15.4517	217.134
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	25	10am local time	2387.5515	0.3	716.265	721.5521	0.0002	0.1944	0.02	0.1482	Rhizosolenia	141.1258	0.01	1.4113	717.825
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	25	3pm local time	24.7572	0.3	7.427	109.4889	0.0002	1.4812	0.02	0.0515	Rhizosolenia	2.5210	0.01	0.0252	7.504
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	25	5pm local time	7.7583	0.3	2.327	90.2362	0.0002	177.5595	0.02	3.5692	Rhizosolenia	0.1723	0.01	0.0017	5.898
ALOHA2002-12-13	ALOHA2002-12-13	22.75	-158.00	2002-12-14	25	10pm local time	17.2274	0.3	5.168	45.8582	0.0002	114.9125	0.02	2.3074	Rhizosolenia	0.1723	0.01	0.0017	7.477
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	5	noon sample	66.6085	0.3	19.983	387.4675	0.0002	0.0444	0.02	0.0784	Rhizosolenia	550.2826	0.01	5.5028	25.564
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	25	noon sample	150.1311	0.3	45.039	210.6345	0.0002	0.1501	0.02	0.0451	Rhizosolenia	89.0822	0.01	0.8908	45.975
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	45	noon sample	25.8086	0.3	7.743	131.1134	0.0002	0.2106	0.02	0.0304	Rhizosolenia	24.7346	0.01	0.2473	8.020
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	75	noon sample	5.8171	0.3	1.745	21.0634	0.0002			0.0042	Rhizosolenia	4.0042	0.01	0.0400	1.789
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	100	noon sample	2.1063	0.3	0.632	29.5521	0.0002			0.0059	Rhizosolenia	15.4271	0.01	0.1543	0.792
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	125	noon sample	0.1225	0.3	0.037	0.6225	0.0002			0.0001	Rhizosolenia	3.4989	0.01	0.0350	0.072
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	150	noon sample				0.8161	0.0002			0.0002
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	25	3am local time	1602.2283	0.3	480.669	186.3551	0.0002	21.1573	0.02	0.4604	Rhizosolenia	0.1437	0.01	0.0014	481.130
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	25	6am local time	151.7408	0.3	45.522	875.5022	0.0002	1.5545	0.02	0.2062	Rhizosolenia	1661.3932	0.01	16.6139	62.342
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	25	10am local time	57.0040	0.3	17.101	1490.1444	0.0002	1.1082	0.02	0.3202	Rhizosolenia	601.9045	0.01	6.0190	23.440
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	25	2pm local time	59.1090	0.3	17.733	120.6049	0.0002	0.8702	0.02	0.0415	Rhizosolenia	57.0040	0.01	0.5700	18.344
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	25	6pm local time	1.6315	0.3	0.489	74.3689	0.0002	67.5144	0.02	1.3652	Rhizosolenia	1.2207	0.01	0.0122	1.867
ALOHA2002-12-14	ALOHA2002-12-14	22.75	-158.00	2002-12-14	25	10pm local time	10.7522	0.3	3.226	32.6916	0.0002	104.3212	0.02	2.0930	Rhizosolenia	0.7348	0.01	0.0073	5.326
ALOHA2002-12-15	ALOHA2002-12-15	22.75	-158.00	2002-12-14	25	4am local time	6.0190	0.3	1.806	249.0723	0.0002	9.7612	0.02	0.2450	Rhizosolenia	1.0559	0.01	0.0106	2.061
ALOHA2002-12-15	ALOHA2002-12-15	22.75	-158.00	2002-12-14	25	6am local time	804.4736	0.3	241.342	687.4963	0.0002	1.3446	0.02	0.1644	Rhizosolenia	0.1661	0.01	0.0017	241.508