Citation:

PANGAEA.818214

Name: Abundance of nifH genes in the Southeast Pacific
Published: 2013-08-07
License: https://creativecommons.org/licenses/by/3.0/
Keywords: MAREDAT_Diazotrophs_Collection

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Keyword(s):

MAREDAT_Diazotrophs_Collection

Related to:

Bonnet, S; Guieu, Cecile; Bruyant, F; Prasil, O; Van Wambeke, France; Raimbault, Patrick; Moutin, Thierry; Grob, C; Gorbunov, Maxim Y; Zehr, Jonathan P; Masquelier, S M; Garczarek, Laurence; Claustre, Hervé (2008): Nutrient limitation of primary productivity in the Southeast Pacific (BIOSOPE cruise). Biogeosciences, 5(1), 215-225, https://doi.org/10.5194/bg-5-215-2008

Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012

Coverage:

Median Latitude: -21.916154 * Median Longitude: -116.420769 * South-bound Latitude: -31.820000 * West-bound Longitude: -136.860000 * North-bound Latitude: -9.000000 * East-bound Longitude: -91.440000

Date/Time Start: 2004-10-31T00:00:00 * Date/Time End: 2004-11-26T00:00:00

Minimum DEPTH, water: 5 m * Maximum DEPTH, water: 70 m

Event(s):

BIOSOPE_EGY * Latitude: -31.820000 * Longitude: -91.440000 * Date/Time: 2004-11-26T00:00:00 * Location: South Pacific * Method/Device: Mooring (long time) (MOORY)

BIOSOPE_HLNC * Latitude: -9.000000 * Longitude: -136.860000 * Date/Time: 2004-10-31T00:00:00 * Location: South Pacific * Method/Device: Mooring (long time) (MOORY)

BIOSOPE04-11-03 * Latitude: -11.510000 * Longitude: -134.350000 * Date/Time: 2004-11-03T00:00:00 * Location: South Pacific * Method/Device: (CTD-RO)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event
2	Latitude of event	Latitude
3	Longitude of event	Longitude
4	Date/Time of event	Date/Time
5	DEPTH, water	Depth water	m			Geocode
6	Trichodesmium, abundance expressed in number of nifH gene copies	Trichodesmium abund nifH copies	10⁶ #/m³	Bonnet, S	Fluorescence-based quantitative real-time PCR (qPCR)
7	Trichodesmium abundance, total	Trichodesmium abund total	10⁶ #/m³	Bonnet, S	Fluorescence-based quantitative real-time PCR (qPCR)
8	Trichodesmium, biomass as carbon	Trichodesmium C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
9	Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies	UCYN-A abund nifH copies	10⁶ #/m³	Bonnet, S	Fluorescence-based quantitative real-time PCR (qPCR)
10	Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-A C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
11	Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies	UCYN-B abund nifH copies	10⁶ #/m³	Bonnet, S	Fluorescence-based quantitative real-time PCR (qPCR)
12	Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-B C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
13	Unicellular cyanobacteria, biomass	UCYN biom	mg/m²	Luo, Yawei	Calculated after Luo et al. (2012)
14	Calothrix, associated species	Calothrix association		Bonnet, S	Fluorescence-based quantitative real-time PCR (qPCR)
15	Calothrix, abundance expressed in number of nifH gene copies	Calothrix abund nifH copies	10⁶ #/m³	Bonnet, S	Fluorescence-based quantitative real-time PCR (qPCR)
16	Calothrix, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	Calothrix C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
17	Heterocyst, biomass	Heterocyst biom	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
18	Diazotrophs, total biomass as carbon	Diazotrophs total C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

156 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Latitude	3 Longitude	4 Date/Time	5 Depth water [m]	6 Trichodesmium abund nifH copies [10⁶ #/m³]	7 Trichodesmium abund total [10⁶ #/m³]	8 Trichodesmium C [mg/m³]	9 UCYN-A abund nifH copies [10⁶ #/m³]	10 UCYN-A C per nifH copies [mg/10⁶ #]	11 UCYN-B abund nifH copies [10⁶ #/m³]	12 UCYN-B C per nifH copies [mg/10⁶ #]	14 Calothrix association	15 Calothrix abund nifH copies [10⁶ #/m³]	16 Calothrix C per nifH copies [mg/10⁶ #]	17 Heterocyst biom [mg/m³]
BIOSOPE_EGY	-31.82	-91.44	2004-11-26	5	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE_HLNC	-9.00	-136.86	2004-10-31	5	0	0.3	0	0.027	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE04-11-03	-11.51	-134.35	2004-11-03	5	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE04-11-04	-13.31	-132.39	2004-11-04	70	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.03	0.01	0
BIOSOPE2004-11-05	-15.20	-130.20	2004-11-05	5	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE04-11-06	-16.87	-128.38	2004-11-06	5	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE04-11-08	-20.13	-123.41	2004-11-08	5	0	0.3	0			0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE2004-11-09	-22.00	-121.50	2004-11-09	5	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE04-11-12	-26.01	-113.99	2004-11-12	5	0	0.3	0	0.184	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE04-11-21	-28.44	-104.75	2004-11-21	5	0	0.3	0			0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE2004-11-22	-30.00	-101.50	2004-11-22	5	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.00	0.01	0
BIOSOPE04-11-23	-29.92	-98.87	2004-11-23	5				0.000	0.0002
BIOSOPE04-11-24	-30.70	-95.83	2004-11-24	5	0	0.3	0	0.000	0.0002	0	0.02	Chaetoceros	0.00	0.01	0