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Liu, Xiao-Lei; Lipp, Julius S; Simpson, Jeffrey H; Lin, Yu-Shih; Summons, Roger E; Hinrichs, Kai-Uwe (2012): (Table 1) Ratio of hydroxy-GDGT vs. the total core GDGT was calculated based on the detection of hydroxy-GDGT [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.786445, Supplement to: Liu, X-L et al. (2012): Mono- and dihydroxyl glycerol dibiphytanyl glycerol tetraethers in marine sediments: Identification of both core and intact polar lipid forms. Geochimica et Cosmochimica Acta, 89, 102-115, https://doi.org/10.1016/j.gca.2012.04.053

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Abstract:
Hydroxylated glycerol dialkyl glycerol tetraethers (hydroxy-GDGTs) were detected in marine sediments of diverse depositional regimes and ages. Mass spectrometric evidence, complemented by information gleaned from two-dimensional (2D) 1H–13C nuclear magnetic resonance (NMR) spectroscopy on minute quantities of target analyte isolated from marine sediment, allowed us to identify one major compound as a monohydroxy-GDGT with acyclic biphytanyl moieties (OH-GDGT-0). NMR spectroscopic and mass spectrometric data indicate the presence of a tertiary hydroxyl group suggesting the compounds are the tetraether analogues of the widespread hydroxylated archaeol derivatives that have received great attention in geochemical studies of the last two decades. Three other related compounds were assigned as acyclic dihydroxy-GDGT (2OH-GDGT-0) and monohydroxy-GDGT with one (OH-GDGT-1) and two cyclopentane rings (OH-GDGT-2). Based on the identification of hydroxy-GDGT core lipids, a group of previously reported unknown intact polar lipids (IPLs), including the ubiquitously distributed H341-GDGT (Lipp J. S. and Hinrichs K. -U. (2009) Structural diversity and fate of intact polar lipids in marine sediments. Geochim. Cosmochim. Acta 73, 6816–6833), and its analogues were tentatively identified as glycosidic hydroxy-GDGTs. In addition to marine sediments, we also detected hydroxy-GDGTs in a culture of Methanothermococcus thermolithotrophicus. Given the previous finding of the putative polar precursor H341-GDGT in the planktonic marine crenarchaeon Nitrosopumilus maritimus, these compounds are synthesized by representatives of both cren- and euryarchaeota. The ubiquitous distribution and apparent substantial abundance of hydroxy-GDGT core lipids in marine sediments (up to 8% of total isoprenoid core GDGTs) point to their potential as proxies.
Related to:
Liu, Xiao-Lei; Lipp, Julius S; Hinrichs, Kai-Uwe (2011): Distribution of intact and core GDGTs in marine sediments. Organic Geochemistry, 42(4), 368-375, https://doi.org/10.1016/j.orggeochem.2011.02.003
Funding:
Seventh Framework Programme (FP7), grant/award no. 247153: Deep subsurface Archaea: carbon cycle, life strategies, and role in sedimentary ecosystems
Coverage:
Median Latitude: 5.397441 * Median Longitude: -58.744601 * South-bound Latitude: -25.344500 * West-bound Longitude: -126.865233 * North-bound Latitude: 48.698150 * East-bound Longitude: 32.701400
Date/Time Start: 1995-03-28T13:12:00 * Date/Time End: 2008-04-27T10:32:00
Minimum DEPTH, sediment/rock: 0.1 m * Maximum DEPTH, sediment/rock: 320.0 m
Event(s):
160-966C  * Latitude: 33.796400 * Longitude: 32.701400 * Date/Time Start: 1995-03-28T13:12:00 * Date/Time End: 1995-03-29T03:20:00 * Elevation: -926.0 m * Penetration: 127 m * Recovery: 101.6 m * Location: Eastern Basin * Campaign: Leg160 * Basis: Joides Resolution * Method/Device: Drilling/drill rig (DRILL) * Comment: 17 cores; 127 m cored; 0 m drilled; 80 % recovery
201-1226B  * Latitude: -3.094480 * Longitude: -90.817980 * Date/Time Start: 2002-02-19T19:55:00 * Date/Time End: 2002-02-23T10:45:00 * Elevation: -3297.0 m * Penetration: 421.4 m * Recovery: 413.69 m * Location: South Pacific Ocean * Campaign: Leg201 * Basis: Joides Resolution * Method/Device: Drilling/drill rig (DRILL) * Comment: 47 cores; 418.9 m cored; 2.5 m drilled; 98.8 % recovery
201-1226E  * Latitude: -3.094050 * Longitude: -90.817980 * Date/Time: 2002-02-23T13:35:00 * Elevation: -3296.4 m * Penetration: 418.4 m * Recovery: 226.96 m * Location: South Pacific Ocean * Campaign: Leg201 * Basis: Joides Resolution * Method/Device: Drilling/drill rig (DRILL) * Comment: 25 cores; 227.5 m cored; 190.9 m drilled; 99.8 % recovery
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEvent
Latitude of eventLatitude
Longitude of eventLongitude
Elevation of eventElevationm
DEPTH, sediment/rockDepth sedmGeocode
Sample code/labelSample labelLiu, Xiao-Lei
Area/localityAreaLiu, Xiao-Lei
Monohydroxy-glycerol dialkyl glycerol tetraethers/total core GDGTOH-GDGT/total core GDGT%Liu, Xiao-LeiMass spectrometer, APCI-MSD single quadrupole
Dihydroxy-glycerol dialkyl glycerol tetraethers/total core GDGT2OH-GDGT/total core GDGT%Liu, Xiao-LeiMass spectrometer, APCI-MSD single quadrupole
10 Identified intact polar glycerol dialkyl glycerol tetraethersIdentified intact polar GDGTsLiu, Xiao-LeiMass spectrometer, APCI-MSD single quadrupole
Size:
59 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Latitude

Longitude

Elevation [m]

Depth sed [m]

Sample label

Area

OH-GDGT/total core GDGT [%]

2OH-GDGT/total core GDGT [%]
10 
Identified intact polar GDGTs
GeoB12806-2 -25.00066714.389167-1330.1Namibia Margin6.00.061Gly-, 2Gly-GDGT; 1Gly-OH-GDGT
GeoB12807-2 -25.34450013.775000-3013.1Namibia Margin6.11Gly-, 2Gly-GDGT; 1Gly-, 2Gly-OH-GDGT
201-1229D -10.976110-77.957830-15130.7201-1229D-4H-4Namibia Margin7.20.112Gly-GDGT; 2Gly-, 3Gly-OH-GDGT
201-1229A -10.976200-77.957650-152185.9201-1229A-22H-1Namibia Margin5.30.062Gly-GDGT
201-1226B -3.094480-90.817980-329783.8201-1226B-10H-3Namibia Margin4.71.722Gly-, 3Gly-GDGT; 2Gly-, 3Gly-OH-GDGT; 2Gly-2OH-GDGT
201-1226E -3.094050-90.817980-3296320.0201-1228E-20H-3Namibia Margin2.20.251Gly-, 2Gly-GDGT; 2Gly-OH-GDGT
204-1250D 44.568430-125.150300-79643.5204-1250D-6H-5Hydrate Ridge5.80.262Gly-GDGT; 2Gly-OH-GDGT
204-1250D44.568430-125.150300-796100.3204-1250D-12H-5Hydrate Ridge6.30.372Gly-, 3Gly-GDGT; 2Gly-, 3Gly-OH-GDGT
311-U1327C 48.698150-126.865233-130479.8311-U1327C-10H-5Cascadia. Margin7.90.472Gly-, 3Gly-GDGT; 2Gly-, 3Gly-OH-GDGT; 3Gly-2OH-GDGT
311-U1327C48.698150-126.865233-1304109.8311-U1327C-13X-6Cascadia. Margin6.10.252Gly-GDGT; 2Gly-OH-GDGT
160-966C 33.79640032.701400-92640.0160-966C-5H-02Mediterranean Sapropel2.72Gly-, 3Gly-GDGT; 2Gly-, 3Gly-OH-GDGT
160-966C33.79640032.701400-92665.0160-966C-7H-04Mediterranean Sapropel1.20.072Gly-GDGT; 2Gly-OH-GDGT
Methanothermococcus thermolithotrophicus14.31Gly-, 2Gly, 3Gly-GDGT; 2Gly-, 3Gly-OH-GDGT