10.1594/PANGAEA.779142Buitenhuis, Erik TheodoorErik TheodoorBuitenhuis0000-0001-6274-5583Li, William K WWilliam K WLiLomas, Michael WMichael WLomas0000-0003-1209-3753Karl, David MichaelDavid MichaelKarl0000-0002-6660-6721Landry, M RM RLandryJacquet, StéphanStéphanJacquet0000-0001-6017-3892PANGAEA2012MARine Ecosystem Model Intercomparison Project (MAREMIP)Dataset10.5194/essd-4-101-20125.2 MBytesapplication/zipCreative Commons Attribution 3.0 UnportedWe compiled a database of bacterial abundance of 39 766 data points. After gridding with 1° spacing, the database covers 1.3% of the ocean surface. There is data covering all ocean basins and depth except the Southern Hemisphere below 350 m or from April until June. The average bacterial biomass is 3.9 ± 3.6 µg l-1 with a 20-fold decrease between the surface and the deep sea. We estimate a total ocean inventory of about 1.3 - 1029 bacteria. Using an average of published open ocean measurements for the conversion from abundance to carbon biomass of 9.1 fg cell-1, we calculate a bacterial carbon inventory of about 1.2 Pg C. The main source of uncertainty in this inventory is the conversion factor from abundance to biomass.The attached zip file contains raw data files submitted by the authors and a NetCDF file. Progressively, raw data will be imported into PANGAEA as distinct data publications related to the original sources (journal or data publications).