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Allison, Nicola; Cohen, Itay; Finch, Adrian A; Erez, Jonathan; EMIF (2011): Seawater carbonate chemistry, Mg/Ca, Sr/Ca, oxygen production and calcification rate during experiments with coral Pocillopora damicornis, 2011 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.774781, Supplement to: Allison, N et al. (2011): Controls on Sr/Ca and Mg/Ca in scleractinian corals: The effects of Ca-ATPase and transcellular Ca channels on skeletal chemistry. Geochimica et Cosmochimica Acta, 75(21), 6350-6360, https://doi.org/10.1016/j.gca.2011.08.012

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Abstract:
The Sr/Ca of aragonitic coral skeletons is a commonly used palaeothermometer. However skeletal Sr/Ca is typically dominated by weekly-monthly oscillations which do not reflect temperature or seawater composition and the origins of which are currently unknown. To test the impact of transcellular Ca2+ transport processes on skeletal Sr/Ca, colonies of the branching coral, Pocillopora damicornis, were cultured in the presence of inhibitors of Ca-ATPase (ruthenium red) and Ca channels (verapamil hydrochloride). The photosynthesis, respiration and calcification rates of the colonies were monitored throughout the experiment. The skeleton deposited in the presence of the inhibitors was identified (by 42Ca spike) and analysed for Sr/Ca and Mg/Ca by secondary ion mass spectrometry. The Sr/Ca of the aragonite deposited in the presence of either of the inhibitors was not significantly different from that of the solvent (dimethyl sulfoxide) control, although the coral calcification rate was reduced by up to 66% and 73% in the ruthenium red and verapamil treatments, respectively. The typical precision (95% confidence limits) of mean Sr/Ca determinations within any treatment was <±1% and differences in skeletal Sr/Ca between treatments were correspondingly small. Either Ca-ATPase and Ca channels transport Sr2+ and Ca2+ in virtually the same ratio in which they are present in seawater or transcellular processes contribute little Ca2+ to the skeleton and most Ca is derived from seawater transported directly to the calcification site. Variations in the activities of Ca-ATPase and Ca-channels are not responsible for the weekly-monthly Sr/Ca oscillations observed in skeletal chronologies, assuming that the specificities of Ca transcellular transport processes are similar between coral genera.
Keyword(s):
Animalia; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Cnidaria; Coast and continental shelf; Laboratory experiment; Pocillopora damicornis; Primary production/Photosynthesis; Red Sea; Single species; Temperate
Funding:
Seventh Framework Programme (FP7), grant/award no. 211384: European Project on Ocean Acidification
Sixth Framework Programme (FP6), grant/award no. 511106: European network of excellence for Ocean Ecosystems Analysis
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Experimental treatmentExp treatAllison, Nicola
IdentificationIDAllison, Nicola
ReplicatesRepl#Allison, Nicola
SalinitySalAllison, Nicola
Temperature, waterTemp°CAllison, Nicola
pHpHAllison, NicolaMeasuredNBS scale
pH, standard deviationpH std dev±Allison, Nicola
Alkalinity, totalATµmol/kgAllison, NicolaAlkalinity, Gran titration (Gran, 1950)
Alkalinity, total, standard deviationAT std dev±Allison, Nicola
10 OxygenO2µmol/lAllison, NicolaTitration, Winkler
11 Oxygen, standard deviationO2 std dev±Allison, Nicola
12 Magnesium/Calcium ratioMg/CaAllison, NicolaICP-MS, Thermo Scientific, XSeries 2
13 Magnesium/Calcium ratio, standard deviationMg/Ca std dev±Allison, Nicola
14 Strontium/Calcium ratioSr/Cammol/molAllison, NicolaICP-MS, Thermo Scientific, XSeries 2
15 Strontium/Calcium ratio, standard deviationSr/Ca std dev±Allison, Nicola
16 Sample IDSample IDAllison, Nicola
17 Oxygen production rateO2 prodµmol/hAllison, NicolaCalculated, see reference(s)
18 Net calcification rate of calcium carbonateNC CaCO3µmol/nubbin/hAllison, NicolaCalculated, see reference(s)
19 Carbonate system computation flagCSC flagNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
20 pHpHNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)Total scale
21 Carbon dioxideCO2µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
22 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
23 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
24 Bicarbonate ion[HCO3]-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
25 Carbonate ion[CO3]2-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
26 Carbon, inorganic, dissolvedDICµmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
27 Aragonite saturation stateOmega ArgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
28 Calcite saturation stateOmega CalNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1204 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Exp treat

ID

Repl [#]

Sal

Temp [°C]

pH
(NBS scale, Measured)

pH std dev [±]

AT [µmol/kg]
(Alkalinity, Gran titration (G...)

AT std dev [±]
10 
O2 [µmol/l]
(Titration, Winkler)
11 
O2 std dev [±]
12 
Mg/Ca
(ICP-MS, Thermo Scientific, XS...)
13 
Mg/Ca std dev [±]
14 
Sr/Ca [mmol/mol]
(ICP-MS, Thermo Scientific, XS...)
15 
Sr/Ca std dev [±]
16 
Sample ID
17 
O2 prod [µmol/h]
(Calculated, see reference(s))
18 
NC CaCO3 [µmol/nubbin/h]
(Calculated, see reference(s))
19 
CSC flag
(Calculated using seacarb afte...)
20 
pH
(Total scale, Calculated using...)
21 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
22 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
23 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
24 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
25 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
26 
DIC [µmol/kg]
(Calculated using seacarb afte...)
27 
Omega Arg
(Calculated using seacarb afte...)
28 
Omega Cal
(Calculated using seacarb afte...)
controlIn-bags140.6258.060.0525102020225.240.098.600.332 to 5267.9315.94579.88578.051999.46207.402222.803.144.75
DMSO controlIn-bags140.6258.010.0624304021245.220.098.460.162 to 5267.8817.69643.48641.461977.41182.802177.902.774.19
Ruthenium red 3.7 µMIn-bags140.6258.070.0524902020325.260.028.520.222 to 5267.9415.38559.50557.741973.59209.432198.403.174.80
Ruthenium red 5.3 µMIn-bags140.6258.080.0324702020255.250.048.380.382 to 5267.9514.83539.48537.781947.56211.512173.903.214.84
Verapamil 0.05 µMIn-bags140.6258.090.0324404020475.250.058.560.442 to 5267.9614.24517.98516.351913.42212.642140.303.224.87
Verapamil 1 µMIn-bags140.6258.060.0424901020755.270.038.690.382 to 5267.9315.81575.11573.301982.92205.672204.403.124.71
Verapamil 5 µMIn-bags140.6258.070.0424503020525.240.068.450.452 to 5267.9415.12550.03548.301940.52205.962161.603.124.72
controlOut-bags (light)140.6258.010.01238080239182 to 513.113.08267.8817.31629.68627.691935.17178.922131.402.714.10
DMSO controlOut-bags (light)140.6258.050.05235050269132 to 512.77.91267.9215.31556.89555.131875.89190.102081.302.884.35
Ruthenium red 3.7 µMOut-bags (light)140.6258.050.0323902027172 to 56.912.80267.9215.58566.76564.971909.15193.472118.202.934.43
Ruthenium red 5.3 µMOut-bags (light)140.6258.040.03237060217242 to 53.610.15267.9115.87577.41575.601901.21188.322105.402.854.31
Verapamil 0.05 µMOut-bags (light)140.6258.070.04224030279112 to 516.821.64267.9413.77501.09499.511767.39187.531968.702.844.30
Verapamil 1 µMOut-bags (light)140.6258.080.03241030258242 to 511.58.96267.9514.46525.88524.221898.30206.142118.903.134.72
Verapamil 5 µMOut-bags (light)140.6258.060.032350110208532 to 50.710.70267.9314.89541.48539.781866.97193.652075.502.944.44
controlOut-bags (dark)140.6257.980.0224604015162 to 5-9.55.99267.8519.44707.09704.862027.99174.982222.402.654.01
DMSO controlOut-bags (dark)140.6257.910.0623308016662 to 5-10.19.61267.7822.18806.70804.161969.30144.622136.102.193.31
Ruthenium red 3.7 µMOut-bags (dark)140.6257.980.0224502016062 to 5-11.83.79267.8519.36704.28702.062019.53174.212213.102.643.99
Ruthenium red 5.3 µMOut-bags (dark)140.6257.990.0224303014352 to 5-12.83.73267.8618.69679.71677.571994.29176.032189.002.674.03
Verapamil 0.05 µMOut-bags (dark)140.6257.910.0523102014992 to 5-12.113.35267.7821.98799.62797.111951.88143.332117.202.173.28
Verapamil 1 µMOut-bags (dark)140.6257.950.0324603016742 to 5-8.63.35267.8221.08766.81764.392052.20165.232238.502.503.78
Verapamil 5 µMOut-bags (dark)140.6257.900.0824602014962 to 5-12.3-2.30267.7724.09876.28873.522090.05149.972264.102.273.44
controlIn-bags240.6258.060.0525102020325.290.038.330.172 to 5267.9315.94579.88578.051999.46207.402222.803.144.75
DMSO controlIn-bags240.6258.010.0624304021245.290.028.420.332 to 5267.8817.69643.48641.461977.41182.802177.902.774.19
Ruthenium red 3.7 µMIn-bags240.6258.060.0425002020425.250.048.420.272 to 5267.9315.88577.50575.681991.19206.542213.603.134.73
Ruthenium red 5.3 µMIn-bags240.6258.090.0424801020325.210.088.660.202 to 5267.9614.48526.82525.161946.14216.282176.903.284.95
Verapamil 0.05 µMIn-bags240.6258.080.0224801020625.260.058.510.142 to 5267.9514.89541.83540.121955.82212.382183.103.224.86
Verapamil 1 µMIn-bags240.6258.060.0424802020445.280.048.590.162 to 5267.9315.74572.73570.931974.64204.812195.203.104.69
Verapamil 5 µMIn-bags240.6258.050.0524801020955.220.068.460.182 to 5267.9216.19588.90587.041983.94201.072201.203.054.61
controlOut-bags (light)240.6257.990.00242060231172 to 510.312.87267.8618.60676.57674.441985.68175.322179.602.664.02
DMSO controlOut-bags (light)240.6258.010.04232040255172 to 59.711.51267.8816.86613.42611.491884.65174.192075.702.643.99
Ruthenium red 3.7 µMOut-bags (light)240.6258.020.0323903026092 to 55.79.72267.8916.92615.50613.571935.23183.052135.202.774.19
Ruthenium red 5.3 µMOut-bags (light)240.6258.050.0424105021582 to 52.97.74267.9215.71571.56569.761925.70195.182136.602.964.47
Verapamil 0.05 µMOut-bags (light)240.6258.080.03237010261132 to 512.212.21267.9514.20516.73515.101865.41202.592082.203.074.64
Verapamil 1 µMOut-bags (light)240.6258.050.03235020158282 to 512.114.47267.9215.31556.89555.131875.89190.102081.302.884.35
Verapamil 5 µMOut-bags (light)240.6258.040.03244050210302 to 50.74.04267.9116.36595.16593.281959.63194.112170.102.944.45
controlOut-bags (dark)240.6257.960.0124804014752 to 5-8.35.69267.8320.70752.87750.502061.49169.812252.002.573.89
DMSO controlOut-bags (dark)240.6257.910.0723108017242 to 5-8.712.26267.7821.98799.62797.111951.88143.332117.202.173.28
Ruthenium red 3.7 µMOut-bags (dark)240.6257.980.0424602016722 to 5-12.63.07267.8519.44707.09704.862027.99174.982222.402.654.01
Ruthenium red 5.3 µMOut-bags (dark)240.6257.990.0024503015522 to 5-10.43.63267.8618.84685.30683.152011.20177.562207.602.694.07
Verapamil 0.05 µMOut-bags (dark)240.6258.000.0224101016722 to 5-8.67.36267.8718.03655.87653.811969.04177.832164.902.704.07
Verapamil 1 µMOut-bags (dark)240.6257.940.0524103016262 to 5-9.17.86267.8121.20771.22768.792016.83158.672196.702.413.63
Verapamil 5 µMOut-bags (dark)240.6257.940.0424901016982 to 5-8.4-1.19267.8121.93797.70795.192085.97164.102272.002.493.76
controlLight1110.37.40
DMSO controlLight1113.67.26
Ruthenium red 3.7 µMLight1110.515.48
Ruthenium red 5.3 µMLight1128.517.33
Verapamil 0.05 µMLight1121.214.72
Verapamil 1 µMLight1113.48.96
Verapamil 5 µMLight1118.715.78
controlDark118.04.14
DMSO controlDark118.14.79
Ruthenium red 3.7 µMDark1112.79.34
Ruthenium red 5.3 µMDark1119.611.07
Verapamil 0.05 µMDark1114.211.38
Verapamil 1 µMDark1113.05.75
Verapamil 5 µMDark1113.210.27
controlLight21-10.57.95
DMSO controlLight21-10.96.58
Ruthenium red 3.7 µMLight21-10.09.76
Ruthenium red 5.3 µMLight21-10.69.80
Verapamil 0.05 µMLight21-9.27.02
Verapamil 1 µMLight21-8.014.61
Verapamil 5 µMLight21-11.95.26
controlDark21-7.95.44
DMSO controlDark21-9.57.22
Ruthenium red 3.7 µMDark21-10.15.82
Ruthenium red 5.3 µMDark21-9.18.65
Verapamil 0.05 µMDark21-7.35.87
Verapamil 1 µMDark21-9.411.02
Verapamil 5 µMDark21-7.73.26