Luo, Y-W; Doney, Scott C; Anderson, L A; Benavides, M; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, K H; Böttjer, D; Capone, DG; Carpenter, E J; Chen, Yaw-Lin; Church, M J; Dore, J E; Falcón, L I; Fernández, A; Foster, R A; Furuya, K; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Global distributions of diazotrophs abundance, biomass and nitrogen fixation rates - Gridded data product (NetCDF) - Contribution to the MAREDAT World Ocean Atlas of Plankton Functional Types. doi:10.1594/PANGAEA.774851
Abstract:
This is a gridded data product based on the previously submitted diazotrophic database. There are 6 variables. Each variable is gridded on a dimension of 360 (longitude) * 180 (latitude) * 33 (depth) * 12 (month). The first group of 3 variables are: (1) number of biomass observations, (2) biomass, and (3) special nifH-gene-based biomass. The second group of 3 variables is same as the first group except that it only grids non-zero data.
We have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling more than 11,000 direct field measurements including 3 sub-databases: (1) nitrogen fixation rates, (2) cyanobacterial diazotroph abundances from cell counts and (3) cyanobacterial diazotroph abundances from qPCR assays targeting nifH genes. Biomass conversion factors are estimated based on cell sizes to convert abundance data to diazotrophic biomass. Data are assigned to 3 groups including Trichodesmium, unicellular diazotrophic cyanobacteria (group A, B and C when applicable) and heterocystous cyanobacteria (Richelia and Calothrix). Total nitrogen fixation rates and diazotrophic biomass are calculated by summing the values from all the groups. Some of nitrogen fixation rates are whole seawater measurements and are used as total nitrogen fixation rates. Both volumetric and depth-integrated values were reported. Depth-integrated values are also calculated for those vertical profiles with values at 3 or more depths.
Related to:
Luo, Y-W; Doney, Scott C; Anderson, L A; Benavides, M; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, K H; Böttjer, D; Capone, DG; Carpenter, E J; Chen, Yaw-Lin; Church, M J; Dore, J E; Falcón, L I; Fernández, A; Foster, R A; Furuya, K; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, doi:10.5194/essd-4-47-2012
Comment:
The attached zip file contains raw data files submitted by the authors and a NetCDF file. Progressively, raw data will be imported into PANGAEA as distinct data publications related to the original sources (journal or data publications).