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Rickaby, Rosalind E M; Henderiks, Jorijntje; Young, J N (2010): Seawater carbonate chemistry and biological processes of coccolithophore (Gephyrocapsa oceanica and Coccolithus pelagicus ssp. braarudii) during experiments, 2011 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.771912, Supplement to: Rickaby, REM et al. (2010): Perturbing phytoplankton: response and isotopic fractionation with changing carbonate chemistry in two coccolithophore species. Climate of the Past, 6(6), 771-785, https://doi.org/10.5194/cp-6-771-2010

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Abstract:
All species of coccolithophore appear to respond to perturbations of carbonate chemistry in a different way. Here, we show that the degree of malformation, growth rate and stable isotopic composition of organic matter and carbonate produced by two contrasting species of coccolithophore (Gephyrocapsa oceanica and Coccolithus pelagicus ssp. braarudii) are indicative of differences between their photosynthetic and calcification response to changing DIC levels (ranging from ~1100 to ~7800 µmol/kg) at constant pH (8.13 ± 0.02). Gephyrocapsa oceanica thrived under all conditions of DIC, showing evidence of increased growth rates at higher DIC, but C. braarudii was detrimentally affected at high DIC showing signs of malformation, and decreased growth rates. The carbon isotopic fractionation into organic matter and the coccoliths suggests that C. braarudii utilises a common internal pool of carbon for calcification and photosynthesis but G. oceanica relies on independent supplies for each process. All coccolithophores appear to utilize bicarbonate as their ultimate source of carbon for calcification resulting in the release of a proton. But, we suggest that this proton can be harnessed to enhance the supply of CO2(aq) for photosynthesis either from a large internal HCO3- pool which acts as a pH buffer (C. braarudii), or pumped externally to aid the diffusive supply of CO2 across the membrane from the abundant HCO3- (G. oceanica), likely mediated by an internal and external carbonic anhydrase respectively. Our simplified hypothetical spectrum of physiologies may provide a context to understand different species response to changing pH and DIC, the species-specific delta p and calcite "vital effects", as well as accounting for geological trends in coccolithophore cell size.
Keyword(s):
Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Chromista; Coccolithus braarudii; Gephyrocapsa oceanica; Growth/Morphology; Haptophyta; Laboratory experiment; Laboratory strains; Not applicable; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species
Funding:
Seventh Framework Programme (FP7), grant/award no. 211384: European Project on Ocean Acidification
Sixth Framework Programme (FP6), grant/award no. 511106: European network of excellence for Ocean Ecosystems Analysis
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Experimental treatmentExp treatRickaby, Rosalind E M
SpeciesSpeciesRickaby, Rosalind E M
SalinitySalRickaby, Rosalind E M
Temperature, waterTemp°CRickaby, Rosalind E M
Light:Dark cycleL:Dhh:hhRickaby, Rosalind E M
Radiation, photosynthetically activePARµmol/m2/sRickaby, Rosalind E M
Bicarbonate ion[HCO3]-µmol/kgRickaby, Rosalind E MCalculated using CO2SYS
Carbonate ion[CO3]2-µmol/kgRickaby, Rosalind E MCalculated using CO2SYS
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmRickaby, Rosalind E MCalculated using CO2SYS
10 Carbon dioxideCO2µmol/kgRickaby, Rosalind E MMeasured
11 pHpHRickaby, Rosalind E MCalculated using CO2SYSNBS scale
12 Carbon, total, particulateTPCµg/lRickaby, Rosalind E MMass spectrometer ANCA-SL 20-20 Europa Scientific
13 Carbon, organic, particulatePOCµg/lRickaby, Rosalind E MMass spectrometer ANCA-SL 20-20 Europa Scientific
14 Nitrogen, organic, particulatePONµg/lRickaby, Rosalind E MTPC
15 Nitrogen, organic, particulatePONµg/lRickaby, Rosalind E MPOC
16 Gephyrocapsa oceanicaG. oceanica#/mlRickaby, Rosalind E Mas counted by CC
17 Coccolithus braarudiiC. braarudii#/mlRickaby, Rosalind E Mas counted by CC
18 Growth rateµ#/dayRickaby, Rosalind E MCalculated, see reference(s)as counted by CC
19 Coccolithus braarudiiC. braarudii#/mlRickaby, Rosalind E MLM counts
20 Growth rateµ#/dayRickaby, Rosalind E MCalculated, see reference(s)LM counts
21 Total particulate carbon per cellTPC/cellpg/#Rickaby, Rosalind E M
22 Carbon, organic, particulate, per cellPOC/cellpg/#Rickaby, Rosalind E M
23 Particulate organic nitrogen per cellPON/cellpg/#Rickaby, Rosalind E MTPC
24 Particulate organic nitrogen per cellPON/cellpg/#Rickaby, Rosalind E MPOC
25 Carbon, inorganic, particulate, per cellPIC/cellpg/#Rickaby, Rosalind E M
26 Particulate inorganic carbon/particulate organic carbon ratioPIC/POCRickaby, Rosalind E M
27 Carbon, organic, particulate/Nitrogen, organic, particulate ratioPOC/PONRickaby, Rosalind E MMeasured
28 Carbon, organic, particulate/Nitrogen, organic, particulate ratioPOC/PONRickaby, Rosalind E MMeasured
29 Total particulate carbon production per cellTPC prod/cellpg/#Rickaby, Rosalind E M
30 Particulate organic carbon production per cellPOC prod/cellpg/#Rickaby, Rosalind E M
31 Particulate organic nitrogen production per cellPON prod/cellpg/#Rickaby, Rosalind E MTPC
32 Particulate organic nitrogen production per cellPON prod/cellpg/#Rickaby, Rosalind E MPOC
33 Particulate inorganic carbon production per cellPIC prod/cellpg/#Rickaby, Rosalind E M
34 δ13C, dissolved inorganic carbonδ13C DIC‰ PDBRickaby, Rosalind E MMass spectrometer Finnigan Delta-ST0
35 δ13C, dissolved inorganic carbonδ13C DIC‰ PDBRickaby, Rosalind E MMass spectrometer Finnigan Delta-STfin
36 δ13C, carbon dioxide, atmosphericδ13C CO2‰ PDBRickaby, Rosalind E M
37 Coccolithus braarudii, collapsed spheresC. braarudii spheres%Rickaby, Rosalind E M
38 Coccolithus braarudii, intact spheresC. braarudii spheres#Rickaby, Rosalind E M
39 Coccolithus braarudii, collapsed spheresC. braarudii spheres#Rickaby, Rosalind E M
40 Coccolithus braarudii, malformedC. braarudii malformed%Rickaby, Rosalind E M
41 Carbonate system computation flagCSC flagNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
42 pHpHNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)Total scale
43 Carbon dioxideCO2µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
44 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
45 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
46 Bicarbonate ion[HCO3]-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
47 Carbonate ion[CO3]2-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
48 Carbon, inorganic, dissolvedDICµmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
49 Alkalinity, totalATµmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
50 Aragonite saturation stateOmega ArgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
51 Calcite saturation stateOmega CalNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1647 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Exp treat

Species

Sal

Temp [°C]

L:D [hh:hh]

PAR [µmol/m2/s]

[HCO3]- [µmol/kg]
(Calculated using CO2SYS)

[CO3]2- [µmol/kg]
(Calculated using CO2SYS)

pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
10 
CO2 [µmol/kg]
(Measured)
11 
pH
(NBS scale, Calculated using C...)
12 
TPC [µg/l]
(Mass spectrometer ANCA-SL 20-...)
13 
POC [µg/l]
(Mass spectrometer ANCA-SL 20-...)
14 
PON [µg/l]
(TPC)
15 
PON [µg/l]
(POC)
16 
G. oceanica [#/ml]
(as counted by CC)
17 
C. braarudii [#/ml]
(as counted by CC)
18 
µ [#/day]
(as counted by CC, Calculated,...)
19 
C. braarudii [#/ml]
(LM counts)
20 
µ [#/day]
(LM counts, Calculated, see re...)
21 
TPC/cell [pg/#]
22 
POC/cell [pg/#]
23 
PON/cell [pg/#]
(TPC)
24 
PON/cell [pg/#]
(POC)
25 
PIC/cell [pg/#]
26 
PIC/POC
27 
POC/PON
(Measured)
28 
POC/PON
(Measured)
29 
TPC prod/cell [pg/#]
30 
POC prod/cell [pg/#]
31 
PON prod/cell [pg/#]
(TPC)
32 
PON prod/cell [pg/#]
(POC)
33 
PIC prod/cell [pg/#]
34 
δ13C DIC [‰ PDB]
(T0, Mass spectrometer Finniga...)
35 
δ13C DIC [‰ PDB]
(Tfin, Mass spectrometer Finni...)
36 
δ13C CO2 [‰ PDB]
37 
C. braarudii spheres [%]
38 
C. braarudii spheres [#]
39 
C. braarudii spheres [#]
40 
C. braarudii malformed [%]
41 
CSC flag
(Calculated using seacarb afte...)
42 
pH
(Total scale, Calculated using...)
43 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
44 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
45 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
46 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
47 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
48 
DIC [µmol/kg]
(Calculated using seacarb afte...)
49 
AT [µmol/kg]
(Calculated using seacarb afte...)
50 
Omega Arg
(Calculated using seacarb afte...)
51 
Omega Cal
(Calculated using seacarb afte...)
pCO2=200AGephyrocapsa oceanica (strain PZ 3.1)331816:082001010.3083.60248.008.608.14849.50436.2156.6448.29135360.861862.75932.2264.1853.56730.8910.9758.88054.08327.7723.6063.07426.621-7.25-6.70-16.74298.028.56247.68246.831075.1888.861172.601324.601.392.15
pCO2=200AGephyrocapsa oceanica (strain PZ 3.1)331816:082001010.3083.60248.008.608.14844.36421.3656.3648.29135360.861862.37931.1294.1643.56753.75626.8263.5883.074-16.74298.028.56247.68246.831075.1888.861172.601324.601.392.15
pCO2=200BGephyrocapsa oceanica (strain PZ 3.1)331816:082001087.7555.15421.2514.607.93835.50509.6452.6454.86126500.897766.04740.2884.1614.33727.0130.6979.20059.29336.1683.7363.89324.250-7.25-6.70-16.74297.8114.53420.58419.141125.9857.391197.901288.000.891.39
pCO2=200BGephyrocapsa oceanica (strain PZ 3.1)331816:082001087.7555.15421.2514.607.93828.36470.7955.5051.71126500.897765.48337.2164.3874.08858.78633.4103.9393.670-16.74297.8114.53420.58419.141125.9857.391197.901288.000.891.39
pCO2=280AGephyrocapsa oceanica (strain PZ 3.1)331816:082001425.25117.90327.1511.408.15801.50375.6454.3643.43111410.831071.94133.7174.8793.89834.5310.9348.90359.78128.0184.0543.23928.695-7.18-6.93-16.97298.0311.28326.62325.501451.34122.781585.401770.001.912.97
pCO2=280AGephyrocapsa oceanica (strain PZ 3.1)331816:082001425.25117.90327.1511.408.15792.07448.5053.7949.14111410.831071.09540.2574.8284.41159.07833.4524.0123.665-16.97298.0311.28326.62325.501451.34122.781585.401770.001.912.97
pCO2=280BGephyrocapsa oceanica (strain PZ 3.1)331816:082001445.20105.45371.0012.758.101194.93747.0774.9365.71147090.806581.23850.7905.0944.46834.2450.74011.11365.52240.9644.1093.60327.620-7.18-6.75-16.79297.9812.79370.33369.061466.80110.611590.201754.401.722.68
pCO2=280BGephyrocapsa oceanica (strain PZ 3.1)331816:082001445.20105.45371.0012.758.101174.64615.0774.0756.86147090.806579.85941.8165.0363.86564.40933.7264.0623.118-16.79297.9812.79370.33369.061466.80110.611590.201754.401.722.68
pCO2=380AGephyrocapsa oceanica (strain PZ 3.1)331816:082001908.10153.25450.9015.658.141280.36817.3676.0767.14141180.872690.69057.8955.3884.75634.5560.61712.02979.13650.5194.7024.15030.153-7.22-6.68-16.72298.0215.54449.88448.331954.67161.692131.902349.802.523.91
pCO2=380AGephyrocapsa oceanica (strain PZ 3.1)331816:082001908.10153.25450.9015.658.141276.36763.6476.0764.29141180.872690.40654.0905.3884.55378.88947.1994.7023.973-16.72298.0215.54449.88448.331954.67161.692131.902349.802.523.91
pCO2=380BGephyrocapsa oceanica (strain PZ 3.1)331816:082001939.15141.55497.8017.308.101011.21622.2164.6459.43196870.936951.36531.6063.2843.01919.3600.60610.60448.12329.6113.0762.82818.138-7.22-6.70-16.74297.9817.17497.02495.311968.24148.392133.802331.402.313.59
pCO2=380BGephyrocapsa oceanica (strain PZ 3.1)331816:082001939.15141.55497.8017.308.101008.36635.0762.3659.14196870.936951.22032.2593.1673.00447.98730.2232.9682.815-16.74297.9817.17497.02495.311968.24148.392133.802331.402.313.59
pCO2=950AGephyrocapsa oceanica (strain PZ 3.1)331816:082004889.95353.701126.0044.358.091342.93987.6484.0782.00180911.097574.23254.5934.6474.53322.4660.43412.21581.46859.9155.1004.97424.656-7.15-6.90-16.94297.9738.801123.011119.164350.36320.854710.005057.205.007.77
pCO2=950AGephyrocapsa oceanica (strain PZ 3.1)331816:082004889.95353.701126.0044.358.091344.07886.5083.5071.43180911.097574.29549.0024.6163.94881.53753.7795.0654.333-16.94297.9738.801123.011119.164350.36320.854710.005057.205.007.77
pCO2=950BGephyrocapsa oceanica (strain PZ 3.1)331816:082004878.60361.401237.5043.008.101337.50679.0784.0761.71171981.257977.77139.4854.8883.58827.1790.55011.99197.83249.6716.1494.51434.190-7.15-6.89-16.93297.9842.641234.321230.084892.55369.215304.405697.405.768.94
pCO2=950BGephyrocapsa oceanica (strain PZ 3.1)331816:082004878.60361.401237.5043.008.101296.641020.2181.7980.00171981.257975.39559.3224.7564.65294.84374.6245.9825.852-16.93297.9842.641234.321230.084892.55369.215304.405697.405.768.94
pCO2=1400AGephyrocapsa oceanica (strain PZ 3.1)331816:082007183.55486.701993.9069.258.061284.64825.6480.3669.14171460.901074.92448.1544.6874.03333.1860.80710.07467.51043.3894.2233.63429.902-7.10-6.92-16.96297.9468.681988.081981.257189.17494.957752.808240.507.7211.98
pCO2=1400AGephyrocapsa oceanica (strain PZ 3.1)331816:082007183.55486.701993.9069.258.061263.79584.7980.0770.86171460.901073.70734.1064.6704.13366.41430.7314.2083.724-16.96297.9468.681988.081981.257189.17494.957752.808240.507.7211.98
pCO2=1400BGephyrocapsa oceanica (strain PZ 3.1)331816:082007159.20503.551907.4566.258.081264.64746.2177.7961.14183970.901068.74340.5624.2283.32426.9920.64211.80161.94136.5493.8102.99524.321-7.10-6.90-16.94297.9665.701901.781895.257201.60519.207786.508303.908.1012.57
pCO2=1400BGephyrocapsa oceanica (strain PZ 3.1)331816:082007159.20503.551907.4566.258.081276.07801.3678.6470.00183970.901069.36443.5604.2753.80562.50139.2503.8523.429-16.94297.9665.701901.781895.257201.60519.207786.508303.908.1012.57
pCO2=200ACoccolithus braarudii (strain 4762)331816:082001016.1577.30261.959.108.111023.64468.0765.7966.7118030.616023550.6727434.668198.75627.93428.329183.6210.7308.9399.026292.406133.70618.79219.057123.524-7.25-6.49-18.3614.0582694410.163297.999.04261.55260.651059.8181.761150.601291.001.271.98
pCO2=200ACoccolithus braarudii (strain 4762)331816:082001016.1577.30261.959.108.111026.21716.9365.5065.8618030.616023550.6727435.760304.42827.81327.965293.140204.79218.71018.812-18.36297.999.04261.55260.651059.8181.761150.601291.001.271.98
pCO2=200BCoccolithus braarudii (strain 4762)331816:082001066.4053.55420.1514.607.921239.93857.2182.0781.2921060.567731700.6736391.145270.41525.89025.642113.7900.41010.77510.617263.464182.14417.43917.27276.646-7.25-6.55-18.4224.516234768.850297.8014.50419.68418.241097.4654.641166.601253.000.851.32
pCO2=200BCoccolithus braarudii (strain 4762)331816:082001066.4053.55420.1514.607.921239.36900.6483.5081.8621060.567731700.6736390.964284.11426.34125.822263.343191.37217.74217.393-18.42297.8014.50419.68418.241097.4654.641166.601253.000.851.32
pCO2=280ACoccolithus braarudii (strain 4762)331816:082001429.45114.90335.8011.708.14805.6452.0773.5712570.611415400.6432523.14533.81347.774234.6010.7747.3578.746336.50421.74930.730150.903-7.18-6.89-18.7618.0332505512.369298.0211.58335.22334.071455.76120.361587.701768.201.882.91
pCO2=280ACoccolithus braarudii (strain 4762)331816:082001429.45114.90335.8011.708.14850.21466.6454.6453.2912570.611415400.6432552.087303.01535.48234.601355.121194.90922.82322.257-18.76298.0211.58335.22334.071455.76120.361587.701768.201.882.91
pCO2=280BCoccolithus braarudii (strain 4762)331816:082001442.80107.10364.1012.658.10650.9359.8615440.604422530.6434288.91626.568159.2160.53411.11210.527185.89217.094102.442-7.18-6.81-18.6819.0162475815.333297.9812.56363.65362.411439.63108.501560.701723.001.692.63
pCO2=280BCoccolithus braarudii (strain 4762)331816:082001442.80107.10364.1012.658.101030.21692.0763.7961.0015440.604422530.6434457.263307.17828.31127.075294.209197.64218.21617.420-18.68297.9812.56363.65362.411439.63108.501560.701723.001.692.63
pCO2=380ACoccolithus braarudii (strain 4762)331816:082001934.65141.05497.2517.308.101050.21663.7063.2170.1421030.636825660.6708409.281258.65224.63527.335151.5760.5869.46210.290274.541173.50116.52518.336101.675-7.2221.5692406617.439297.9817.15496.34494.641966.00148.262131.402328.902.313.59
pCO2=380ACoccolithus braarudii (strain 4762)331816:082001934.65141.05497.2517.308.101055.0765.7921030.636825660.6708411.17425.637275.81117.197297.9817.15496.34494.641966.00148.262131.402328.902.313.59
pCO2=380BCoccolithus braarudii (strain 4762)331816:082001942.80131.45539.6518.758.06983.93622.3061.7975.5118920.621321200.6609464.117293.53829.14435.620180.6810.6137.2769.932306.719193.98919.26023.540119.405-7.22-6.70-18.5716.8202725516.017297.9418.61538.66536.811945.86133.832098.302274.902.093.24
pCO2=380BCoccolithus braarudii (strain 4762)331816:082001942.80131.45539.6518.758.061032.21627.7664.0796.2918920.621321200.6609486.894296.11230.22245.418321.771195.69019.97330.015-18.57297.9418.61538.66536.811945.86133.832098.302274.902.093.24
pCO2=950ACoccolithus braarudii (strain 4762)331816:082004906.75353.551286.3044.708.09756.21439.5068.6463.2915110.49418770.4745862.274501.14078.27072.162341.7490.6627.9896.559409.161237.79837.14034.242162.165-7.15-6.95-18.8279.5456324576.087297.9744.311282.741278.334969.63366.565380.505767.905.728.87
pCO2=950ACoccolithus braarudii (strain 4762)331816:082004906.75353.551286.3044.708.09749.36466.6469.5050.1415110.49418770.4745854.455532.09079.24757.175405.451252.48437.60427.131-18.82297.9744.311282.741278.334969.63366.565380.505767.905.728.87
pCO2=950BCoccolithus braarudii (strain 4762)331816:082004886.55375.601189.5041.308.12743.64441.7967.5065.2915960.49419480.4084784.433466.01971.20368.867318.4150.6906.5986.385320.398190.34329.08228.128130.055-7.15-6.97-18.8482.9195526774.353298.0040.981186.161182.094924.31389.215354.505771.806.079.42
pCO2=950BCoccolithus braarudii (strain 4762)331816:082004886.55375.601189.5041.308.12734.79432.9369.5067.2915960.49419480.4084775.090456.67673.31270.976316.582186.52729.94428.990-18.84298.0040.981186.161182.094924.31389.215354.505771.806.079.42
pCO2=1400ACoccolithus braarudii (strain 4762)331816:082007167.55515.051868.1064.908.09879.64547.7987.7983.8620590.5100-7.10-6.95-18.8298.089630890.932297.9764.341862.451856.057217.29532.477814.108347.408.3012.89
pCO2=1400ACoccolithus braarudii (strain 4762)331816:082007167.55515.051868.1064.908.09871.93532.9385.5082.4320590.5100-18.82297.9764.341862.451856.057217.29532.477814.108347.408.3012.89
pCO2=1400BCoccolithus braarudii (strain 4762)331816:082007168.25526.751827.5563.458.10844.21586.3681.7985.8616570.56946670.27451265.689879.096122.617128.721426.8580.4996.7806.891347.493241.35433.66435.340117.193-7.10-7.53-19.4095.1221631288.503297.9862.941821.931815.687225.07545.497833.508382.508.5113.20
pCO2=1400BCoccolithus braarudii (strain 4762)331816:082007168.25526.751827.5563.458.10866.21554.6483.7982.4316570.56946670.27451298.672831.549125.616123.581356.548228.30034.48833.929-19.40297.9862.941821.931815.687225.07545.497833.508382.508.5113.20