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Hopkinson, Brian A; Xu, Yan; Shi, Dalin; McGinn, Patrick J; Morel, Francois M M (2010): Seawater carbonate chemistry, pigments and proteins during experiments with phytoplankton, 2010 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.758071, Supplement to: Hopkinson, BA et al. (2010): The effect of CO2 on the photosynthetic physiology of phytoplankton in the Gulf of Alaska. Limnology and Oceanography, 55(5), 2011-2024, https://doi.org/10.4319/lo.2010.55.5.2011

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Abstract:
In the high-nutrient, low-chlorophyll waters of the Gulf of Alaska, microcosm manipulation experiments were used to assess the effect of CO2 on growth and primary production under iron-limited and iron-replete conditions. As expected, iron had a strong effect on growth and photosynthesis. A modest and variable stimulation of growth and biomass production by CO2 (high CO2: 77-122 Pa; low CO2: 11-17 Pa) was observed under both iron-replete and iron-limited conditions, though near the limit of precision of our measurements in slow-growing low-iron experiments. Physiological acclimations responsible for the changes in growth were assessed. Under iron-limited conditions, growth stimulation at high CO2 appeared to result from an increase in photosynthetic efficiency, which we attribute to energy savings from down-regulation of the carbon concentrating mechanisms. In some cases, iron-rich photosynthetic proteins (PsbA, PsaC, and cytochrome b6) were down-regulated at elevated CO2in iron-limited controls. Under iron-replete conditions, there was an increase in growth rate and biomass at high CO2 in some experiments. This increase was unexpectedly supported by reductions in cellular carbon loss, most likely decreased respiration. We speculate that this effect may be due to acclimation to decreased pH rather than high CO2. The variability in responses to CO2 among experiments did not appear to be caused by differences in phytoplankton community structure and may reflect the sensitivity of the net response of phytoplankton to antagonistic effects of the several parameters that co-vary with CO2.
Keyword(s):
Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Entire community; Laboratory experiment; Micro-nutrients; North Pacific; Open ocean; Pelagos; Temperate
Funding:
Seventh Framework Programme (FP7), grant/award no. 211384: European Project on Ocean Acidification
Sixth Framework Programme (FP6), grant/award no. 511106: European network of excellence for Ocean Ecosystems Analysis
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Experimental treatmentExp treatHopkinson, Brian A
2Time, incubationT incubationdayHopkinson, Brian A
3SalinitySalHopkinson, Brian A
4Temperature, waterTemp°CHopkinson, Brian A
5pHpHHopkinson, Brian ApH meter (Oakton)Total scale
6pH, standard deviationpH std dev±Hopkinson, Brian A
7Carbon, inorganic, dissolvedDICµmol/kgHopkinson, Brian A
8Nitrate[NO3]-µmol/lHopkinson, Brian AColorimetry
9Phosphate[PO4]3-µmol/lHopkinson, Brian AColorimetry
10SiliconSiµmol/lHopkinson, Brian AColorimetry
11Carbonate system computation flagCSC flagNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
12Carbon dioxideCO2µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
13Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
14Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
15Bicarbonate ion[HCO3]-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
16Carbonate ion[CO3]2-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
17Alkalinity, totalATµmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
18Aragonite saturation stateOmega ArgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
19Calcite saturation stateOmega CalNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
20Chlorophyll aChl aµg/lHopkinson, Brian AFluorometry
21Chlorophyll a, standard deviationChl a std dev±Hopkinson, Brian A
22FucoxanthinFucoµg/lHopkinson, Brian AHigh Performance Liquid Chromatography (HPLC)
23Fucoxanthin, standard deviationFuco std dev±Hopkinson, Brian A
2419-ButanoyloxyfucoxanthinBut-fucoµg/lHopkinson, Brian AHigh Performance Liquid Chromatography (HPLC)
2519-Butanoyloxyfucoxanthin, standard deviationBut-fuco std dev±Hopkinson, Brian A
2619-HexanoyloxyfucoxanthinHex-fucoµg/lHopkinson, Brian AHigh Performance Liquid Chromatography (HPLC)
2719-Hexanoyloxyfucoxanthin, standard deviationHex-fuco std dev±Hopkinson, Brian A
28Chlorophyll bChl bµg/lHopkinson, Brian AHigh Performance Liquid Chromatography (HPLC)
29Chlorophyll b, standard deviationChl b std dev±Hopkinson, Brian A
30Photosynthetic protein PsbAPsbApmol/µgHopkinson, Brian Asee reference(s)
31Photosynthetic protein, PsbA, standard deviationPsbA std dev±Hopkinson, Brian A
32Photosynthetic protein, cytochrome, b6fCytb6pmol/µgHopkinson, Brian Asee reference(s)
33Photosynthetic protein, cytochrome, b6f, standard deviationCytb6 std dev±Hopkinson, Brian A
34Photosynthetic protein, PsbCPsaCpmol/µgHopkinson, Brian Asee reference(s)
35Photosynthetic protein, PsbC, standard deviationPsaC std dev±Hopkinson, Brian A
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1001 data points

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